View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_47 (Length: 284)
Name: NF19860_low_47
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 14577877 - 14578121
Alignment:
| Q |
22 |
acttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcatgaaccat |
121 |
Q |
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| T |
14577877 |
acttcatgaattgtcaatctctcgaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcaagaaccat |
14577976 |
T |
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| Q |
122 |
tataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatctaatggttggagcactttgtga |
221 |
Q |
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| T |
14577977 |
tata-tgaatattacgtgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataagaatctaatggttggagcacttcgtaa |
14578075 |
T |
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| Q |
222 |
taagcttcgtgaattgtcggtctagagaaatgacaatgctctttct |
267 |
Q |
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| T |
14578076 |
taagcttcgtgaattgtcagtctagagaaatgacaatgctctttct |
14578121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 14578058 - 14578319
Alignment:
| Q |
1 |
ggttgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatat |
100 |
Q |
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| T |
14578058 |
ggttggagcacttcgtaataagcttcgtgaattgtcagtctagagaaatgacaatgctcttt-ctctttggctaatgctacttgtagcgaaagtttacat |
14578156 |
T |
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| Q |
101 |
agcgaattaatcatgaaccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatct |
200 |
Q |
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| T |
14578157 |
atcgaattaatcacgaaccattata-tgaatattaagtgactgtaacggaaaactctcttttgcatcc-accagttgtgttttccaccaaataagaatct |
14578254 |
T |
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| Q |
201 |
aatggttggagcactttgtgataagcttcgtgaattgtcggtctagagaaatgacaatgctcttt |
265 |
Q |
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| T |
14578255 |
aatggttggagcacttcatgataagctttgtgaattgttagcctcgagaaatagcaatgctcttt |
14578319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 14577282 - 14577527
Alignment:
| Q |
18 |
ataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcatgaa |
117 |
Q |
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| T |
14577282 |
ataagcttcgtgaattgtcagtctcaagaaatagcaatgctcttttctctttggataatgttgcttgtagcgaaagtttacatagcgaattaatcacgaa |
14577381 |
T |
|
| Q |
118 |
ccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatctaatggttggagcacttt |
217 |
Q |
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| T |
14577382 |
ccgttat-atgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccgcttgtg-tttataccaaataagaatttaatggttggagcacttc |
14577479 |
T |
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| Q |
218 |
gtgataagcttcgtgaattgtcggtctagagaaatgacaatgctcttt |
265 |
Q |
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| T |
14577480 |
gtgataagcttcgtgaattgtcaatctcaagaaatagcaatgctcttt |
14577527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14577466 - 14577701
Alignment:
| Q |
1 |
ggttgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatat |
100 |
Q |
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||||| ||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||| || |
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| T |
14577466 |
ggttggagcacttcgtgataagcttcgtgaattgtcaatctcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacat |
14577565 |
T |
|
| Q |
101 |
agcgaattaatcatgaaccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatct |
200 |
Q |
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| T |
14577566 |
agcaaattaatcacgaaccgtgat-atgaatattaagtga--ctagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataagaatct |
14577662 |
T |
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| Q |
201 |
aatggttggagcactttgtgataagcttcgtgaattgtc |
239 |
Q |
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| T |
14577663 |
aatagttggagcacttcgtgataagcttcgtgaattgtc |
14577701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14578258 - 14578500
Alignment:
| Q |
1 |
ggttgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatat |
100 |
Q |
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||||| |||||||| |||||| ||| ||||||||| || ||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||| || |
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| T |
14578258 |
ggttggagcacttcatgataagctttgtgaattgttagcctcgagaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacat |
14578357 |
T |
|
| Q |
101 |
agcgaattaatcatgaaccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatct |
200 |
Q |
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| T |
14578358 |
accaaattaatcacgaacggttat-atgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccacttatgttttccaccaaataagaatct |
14578456 |
T |
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| Q |
201 |
aatggttggagcactttgtgataagcttcgtgaattgtcggtct |
244 |
Q |
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| T |
14578457 |
aatggttgctgcacttcgcgataagcttcgtaaattgtcagtct |
14578500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 14577667 - 14577872
Alignment:
| Q |
2 |
gttgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatata |
101 |
Q |
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| T |
14577667 |
gttggagcacttcgtgataagcttcgtgaattgtcacactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacata |
14577766 |
T |
|
| Q |
102 |
gcgaattaatcatgaaccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataacaatcta |
201 |
Q |
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| T |
14577767 |
gcgaattaatcacaaacctttat-atgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatcta |
14577865 |
T |
|
| Q |
202 |
atggttg |
208 |
Q |
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| T |
14577866 |
atggttg |
14577872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 8907180 - 8907327
Alignment:
| Q |
73 |
taatgttacttgtagcgaaagtttatatagcgaattaatcatgaaccattataatgaatattatgcgaatgtagcataaaactctcttttgcatcccatc |
172 |
Q |
| |
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||||| |||||||||| |||||||| ||| |||||||||| || ||||| ||||||||| || | ||||| |||||||| ||||||||| |||| |
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| T |
8907180 |
taatgctacttgtagcaaaagtttacataacgaattaatcgcaaattgttata-tgaatattaaatgactatagcaaaaaactctgttttgcatctcatc |
8907278 |
T |
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| Q |
173 |
acctgtgttttccaccaaataacaatctaatggttggagcactttgtga |
221 |
Q |
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| T |
8907279 |
gcttgtgttttccaccaaataaaaatctaattgtttgagcacttcgtga |
8907327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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