View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_48 (Length: 283)
Name: NF19860_low_48
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 49848284 - 49848535
Alignment:
| Q |
14 |
tacttaaatgatttccatttgaagcatctatgaatcctctctgtggataggatgatggagacatagaaggaatattgaagctattactagttgaagcttc |
113 |
Q |
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| T |
49848284 |
tacttaaatgatttccatttgaagcatctatgaatcctctctgtggataggatgatggagacatagaaggaatattgaagctattactagttgaagcttc |
49848383 |
T |
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| Q |
114 |
aatagaatttccaaaattattcatatttgtcatagaagaagagtgatcaaagcttggagaagtgttctgttccattttttgaagcaatcttggcatccaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49848384 |
aatagaatttccaaaattattcatatttgtcatagaagaagagttatcaaagcttggagaagtgttctgttccattttttgaagcaatcttggcatccaa |
49848483 |
T |
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| Q |
214 |
aaacacttaacagcatcaatgaatctcttgctaccagattcaatgttaagtt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49848484 |
aaacacttaacagcatcaatgaatctcttgctaccagattcaatgttaagtt |
49848535 |
T |
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