View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_54 (Length: 266)
Name: NF19860_low_54
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_54 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24136572 - 24136816
Alignment:
| Q |
1 |
gggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24136572 |
gggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccagcacatgtgc |
24136671 |
T |
|
| Q |
101 |
ttaaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24136672 |
ttaaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttagcctaa |
24136771 |
T |
|
| Q |
201 |
cccgcaataattgcttcccaagatgcgcaatcgcgttgagccatc |
245 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24136772 |
ccagcaataattgcttcccaagatgcacaatcgcgttgagccatc |
24136816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24134258 - 24134503
Alignment:
| Q |
1 |
gggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| | | |||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
24134258 |
gggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccataccagcacatgtgc |
24134357 |
T |
|
| Q |
101 |
ttaaa-gcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttacccta |
199 |
Q |
| |
|
| ||| | ||||||| ||| ||||| |||| ||| | | |||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| |
|
|
| T |
24134358 |
tcaaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgaccagtctgagccta |
24134457 |
T |
|
| Q |
200 |
acccgcaataattgcttcccaagatgcgcaatcgcgttgagccatc |
245 |
Q |
| |
|
||| |||||||||| |||||||| | |||||||| | ||||||| |
|
|
| T |
24134458 |
accaccaataattgccacccaagatacacaatcgcggttagccatc |
24134503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
57 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
155 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
156 |
accagcatgtccatagcttattcatagtgaccagtct |
192 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 45149295 - 45149086
Alignment:
| Q |
37 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
135 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
|
|
| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
136 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
235 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
|
| Q |
236 |
ttgagccatc |
245 |
Q |
| |
|
|||| |||| |
|
|
| T |
45149095 |
ctgagtcatc |
45149086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University