View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_58 (Length: 250)
Name: NF19860_low_58
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27868378 - 27868618
Alignment:
| Q |
1 |
ctagccatatgcttgcgttatcacatgtttcctcatctagctccttagtatgtatgactttgggccttttgagtgttagggttctatgtgaatatctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27868378 |
ctagccatatgcttgcgttatcacatgtttcctcatctagctccttagtatgtatgactttgggccttttgagtgttagggttctatgtgaatatctcac |
27868477 |
T |
|
| Q |
101 |
tcttaccatttttcatgcctccttggatggttgtccttcattcttgacagcaac----aatataagactgatattcacctttagatcggatcatgatctc |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27868478 |
tcttaccattttgcatgcctccttggatggttgtccttcattcttgacagcaacaattaatataagactgatattcacctttagatcggatcatgatctc |
27868577 |
T |
|
| Q |
197 |
tcctttatccacatcgataagtgcttcatcttttgcaagaa |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27868578 |
tcctttatccacatcgatgagtgcttcatcttttgcaagaa |
27868618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 12024413 - 12024482
Alignment:
| Q |
5 |
ccatatgcttgcgttatcacatgtttcctcatctagctccttagtatgtatgactttgggccttttgagt |
74 |
Q |
| |
|
|||||||| || |||||||| | ||||| |||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
12024413 |
ccatatgcatgtgttatcacctagttccttatctggatccttagtttgtatgactttgggccttttgagt |
12024482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 16164813 - 16164870
Alignment:
| Q |
43 |
ccttagtatgtatgactttgggccttttgagtgttagggttctatgtgaatatctcac |
100 |
Q |
| |
|
||||||| ||||||||| ||||| | ||||||| || ||||||||||||||| ||||| |
|
|
| T |
16164813 |
ccttagtttgtatgactatgggcttcttgagtgctatggttctatgtgaatacctcac |
16164870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University