View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_6 (Length: 543)
Name: NF19860_low_6
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 4 - 521
Target Start/End: Original strand, 46397073 - 46397587
Alignment:
| Q |
4 |
gtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagagattaattagaattagaatttcttcgaccctttgtatggttactctagaaatg |
103 |
Q |
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| T |
46397073 |
gtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagagattaattagaattagaatttcttcgaccctttgtatggttactctagaaatg |
46397172 |
T |
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| Q |
104 |
tttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtcatcacatttgtttcgtcactgacatttagaatca |
203 |
Q |
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| T |
46397173 |
tttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtca---catttgtttcgtcactgacatttagaatca |
46397269 |
T |
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| Q |
204 |
ttcatctttaaactctcctgacatttgttatgcttgcagtttgcgttgcccgtagaatactataatagtttcaccggcttctgttttgttgttcctgtta |
303 |
Q |
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| T |
46397270 |
ttcatctttaaactctcccgacatttgttatgcttgcagtttgcgttgcccgtagaatactataatagtttcaccggcttctgttttgttgttcctgtta |
46397369 |
T |
|
| Q |
304 |
tttagttgattggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgctatccagattctacattctactggtgtcatac |
403 |
Q |
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| T |
46397370 |
tttagttgattggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgctatccagattctacattccactggtgtcatac |
46397469 |
T |
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| Q |
404 |
caccgaagtactcttactctcaaacataagcaaaataaataaatacatagatatatttttgtttatatgtaagaacggatggatggaatgtttgataagc |
503 |
Q |
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| T |
46397470 |
caccgaagtactcttactctcaaacataagcaaaataaataaatacatagatatatttttgtttatatgtaagaacggatggatggaatgtttgataagc |
46397569 |
T |
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| Q |
504 |
atcatacgtggtaaatgc |
521 |
Q |
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| T |
46397570 |
atcatacgtggtaaatgc |
46397587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 7216959 - 7217271
Alignment:
| Q |
4 |
gtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagag-attaattagaattagaatttcttcgaccctttgtatggttactctagaaat |
102 |
Q |
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|||||||||||||||||||||| ||||||||||||||| || |||||| ||||| |||||||||| ||||||||||||| | ||||| ||||||||||| |
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| T |
7216959 |
gtactgtgagtgtgaggctttcttagcctgcaattttgtggagtagaggattaagtagaattagagtttcttcgaccctatttatggccactctagaaat |
7217058 |
T |
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| Q |
103 |
gtttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtcatcacatttgtttcgtcactgacatttagaatc |
202 |
Q |
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| T |
7217059 |
gtttggccgccaacaatctggttctcccaacgactggatttggtcccaaggagaacctcattgtg---tcacatttgttttgttactgacatttagaatc |
7217155 |
T |
|
| Q |
203 |
attcatctttaaactctcctgacattt---------gttatgcttgcagtttgcgttgcccgtagaatactataatagtttcaccggcttctgttttgtt |
293 |
Q |
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| T |
7217156 |
attcatcttt-gactctcttgacatttgacaagcaggttttgcttgcggtttgcgctacgcctagagtattgtattagtttcaccggcttctgttttgtt |
7217254 |
T |
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| Q |
294 |
gttcctgttatttagtt |
310 |
Q |
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|||| ||||||| |||| |
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| T |
7217255 |
gttcttgttattgagtt |
7217271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 7217359 - 7217416
Alignment:
| Q |
314 |
tggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgc |
371 |
Q |
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|||| ||||||||||||||||||||||||||||||| || |||||||||| |||||| |
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| T |
7217359 |
tggcttactttctggacttctatatgttcattttactttgaatttcaaaatctgatgc |
7217416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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