View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19860_low_74 (Length: 209)
Name: NF19860_low_74
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_74 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 32710296 - 32710174
Alignment:
| Q |
87 |
agtagctttcgcacatctatatatatgggctcccattaaacgtagagaagcnnnnnnncaatagagcatatactaagaaagactgaaagaagaaacaaaa |
186 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32710296 |
agtagctttcgcacatctatatatacgggctctcattaaacgtagagaagcaaaaaaacaatagagcatatactaagaaagactgaaagaagaaacaaaa |
32710197 |
T |
|
| Q |
187 |
gcaagaatgaaagtatcacaagt |
209 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32710196 |
gcaagaatgaaagtatcacaagt |
32710174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 32710365 - 32710323
Alignment:
| Q |
18 |
gaatataacatgcacaaaaagcactatgttagttgataacatg |
60 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
32710365 |
gaatataatatgcacaaaaagtactatgttagttgataacatg |
32710323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University