View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19860_low_8 (Length: 527)
Name: NF19860_low_8
Description: NF19860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19860_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 192 - 472
Target Start/End: Complemental strand, 36166332 - 36166047
Alignment:
| Q |
192 |
ataagcaatgaataatttgagtcaatgagatttaaaatggacttagttgatggaataagaactaatatgtaaaattatatacatgtacaatggttttgat |
291 |
Q |
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| T |
36166332 |
ataagcaatgaataatttgagtcaatgagatttaaaatggacttagttgatggaataagaactaatatgtaaaattatatatatgtacaatggttttgat |
36166233 |
T |
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| Q |
292 |
ctgatattatttacagtagnnnnnnnnnnnnn-ggggtaacagatacagtagtttttaatgatgacatatatat----tatataaagtagttaagccaat |
386 |
Q |
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| T |
36166232 |
ctgatattatttacagtagtttttttattttttggggtaacagatacagtagtttttaatgatgacatatatatatattatataaagtagttaagccaat |
36166133 |
T |
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| Q |
387 |
gcttgccctcaatgtagctaagacctacgagtatgtcatttgcatgattttaaatatttgttgaagacaaatatagtccaaaggaa |
472 |
Q |
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| T |
36166132 |
gcttgccctcaatgtagctaagacctacgagtatgtcatttgcatgattttaaatatctgttgaagacaaatatagtccaaaggaa |
36166047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 36166504 - 36166357
Alignment:
| Q |
17 |
aaatagaatattcacaacctccaactttattgcaactaactattcctacaaggttactacttctcactcagtctcaagggacttagctccactaataata |
116 |
Q |
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| T |
36166504 |
aaatagaatattcacaacctccaactttattgcaactaactattcctacaaggttactacttctcactcagtctcaagggacttagctccactaataata |
36166405 |
T |
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| Q |
117 |
acgagacatgtgaaggaatatcaagggtaacacaagggagaactaggg |
164 |
Q |
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| T |
36166404 |
acgagacatgtgaaggaatatcaagggtaacacaagggaaaactaggg |
36166357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 36165991 - 36165955
Alignment:
| Q |
484 |
acggatcaaacaatggacttagttgatgcctatgctt |
520 |
Q |
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| T |
36165991 |
acggatcaaacaatggacttagttcatgcctacgctt |
36165955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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