View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19861_low_1 (Length: 624)
Name: NF19861_low_1
Description: NF19861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19861_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 178 - 492
Target Start/End: Original strand, 1186343 - 1186650
Alignment:
| Q |
178 |
aatgcatatacttttgaggagtcaaactcttac-ttacttctcacatttgatatagactattttcgtgtgtttgtttttgcgtgccaccgtgcgtttttt |
276 |
Q |
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| T |
1186343 |
aatgcatatacttttgaggagtcaaactctttccttacttctcacatttcatatagactattttcgtgtgtttgttttcgcgtgccaccgtgcgtttttt |
1186442 |
T |
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| Q |
277 |
cacttctacaatctgtagcttcacaattatcacagcgagaagacattgagacacgagaaatatagtttgtatgcgtatccaaacgaacacttattatacc |
376 |
Q |
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| T |
1186443 |
cacttctacaatctgtagcttcacaattatcacagcgagaagacattgagacgcgagaaaaatagtttggatgcgtatccaaacgaacacttattatacc |
1186542 |
T |
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| Q |
377 |
agattaaagaaaccatcatgtaagaactataccagattaaagcaaattttgtttagtcctttacaaagatattttcttatcatactacttaacaatcaca |
476 |
Q |
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| T |
1186543 |
ag--------aaccatcatgtaataactataccagattaaagcaaattttgtttagtcctttaacaagatattttcttatcataccacttaacaatcaca |
1186634 |
T |
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| Q |
477 |
ctcgtggcatgactta |
492 |
Q |
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|||||||||||||||| |
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| T |
1186635 |
ctcgtggcatgactta |
1186650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 1006986 - 1007149
Alignment:
| Q |
15 |
atgaaaacaaaaattgaaaaggaatagaataataatacctagtgagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaaga |
114 |
Q |
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| T |
1006986 |
atgaaaacaaaaattgaaaaggaatagaagaataatacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaaga |
1007085 |
T |
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| Q |
115 |
acggtggcgccattaggggtttcatttggtgaatcatcatcagaagaagaatctgatacatcaa |
178 |
Q |
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| T |
1007086 |
acggtggcgacattaggggtttcatttggtgaatcatcagaagaagaagaatctgatacatcaa |
1007149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 1186679 - 1186784
Alignment:
| Q |
497 |
agcagaatctgcactcaacatcaagaaacatactatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaat |
596 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186679 |
agcagaacctgcactcaacatca-gagacatactatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaat |
1186777 |
T |
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| Q |
597 |
gcgtaat |
603 |
Q |
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||||||| |
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| T |
1186778 |
gcgtaat |
1186784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 499 - 603
Target Start/End: Original strand, 17001621 - 17001724
Alignment:
| Q |
499 |
cagaatctgcactcaacatcaagaaacatactatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaatgc |
598 |
Q |
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||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17001621 |
cagaacctgcactcaacatca-gagacatactatgagcagaacctgcacaaaatatattgaagctcatcttatcttatgattaaaaaccgagaacaatgc |
17001719 |
T |
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| Q |
599 |
gtaat |
603 |
Q |
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||||| |
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| T |
17001720 |
gtaat |
17001724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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