View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19861_low_5 (Length: 201)
Name: NF19861_low_5
Description: NF19861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19861_low_5 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4390201 - 4390401
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4390201 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcac |
4390300 |
T |
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| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4390301 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgca |
4390400 |
T |
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| Q |
201 |
a |
201 |
Q |
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| |
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| T |
4390401 |
a |
4390401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4377518 - 4377718
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
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||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4377518 |
tcttccattgaactctatgatgatcgtccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcac |
4377617 |
T |
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| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
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| T |
4377618 |
aaaccctacaccacatctcgaaaccatatcacacattcgaacaaactccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgca |
4377717 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
4377718 |
a |
4377718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4385091 - 4385288
Alignment:
| Q |
1 |
tcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggac |
100 |
Q |
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||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
4385091 |
tcttccattgaactctatga---tcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcac |
4385187 |
T |
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| Q |
101 |
aaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgca |
200 |
Q |
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| T |
4385188 |
aaaccctacaccacatctcgaaaccatagcacacatttgaacaaactccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgca |
4385287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 5725298 - 5725142
Alignment:
| Q |
45 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
144 |
Q |
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|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| || ||||||||||||| | | ||||||||||||||||| ||| || |
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| T |
5725298 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
5725199 |
T |
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| Q |
145 |
actccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgcaa |
201 |
Q |
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| || | |||||| || || | | | |||| ||||||||||||||||||| |||| |
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| T |
5725198 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaa |
5725142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 4370382 - 4370452
Alignment:
| Q |
24 |
tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
94 |
Q |
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||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4370382 |
tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4370452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 4365991 - 4366058
Alignment:
| Q |
27 |
tccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
94 |
Q |
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|||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4365991 |
tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4366058 |
T |
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