View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19862_low_1 (Length: 757)
Name: NF19862_low_1
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19862_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 12 - 742
Target Start/End: Original strand, 50554362 - 50555122
Alignment:
| Q |
12 |
agcagagagaatcatatcaaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554362 |
agcagagagaatcatatcaaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttg |
50554461 |
T |
|
| Q |
112 |
atatgaaacgccaaagaaggtatttccgtctaactt----------------cttattatatgtggttttcaaattatgatataataatgattcatgaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50554462 |
atatgaaacgccaaagaaggtatttccgtctaactttaaatacaacacttttcttattatatttggttttcaaattatgatataataatgattcatgaca |
50554561 |
T |
|
| Q |
196 |
tggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554562 |
tggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgt |
50554661 |
T |
|
| Q |
296 |
tttggagcataatcttttgtgag-------------------cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactg |
376 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
50554662 |
tttggagcataatcttttgtgagatgtataacagctaaacagcataagtagtcatcattttcttcccatttgaattttgatctctcaggttgaaaaactg |
50554761 |
T |
|
| Q |
377 |
aaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaag |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50554762 |
aaactggaaaatgcaacactatataaacagtttactgataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgttgaag |
50554861 |
T |
|
| Q |
477 |
ctttgagagctaaggtatacagtgagct-------taattatgcatacgaaaataaatatcaatgattgaagaaattaactaacatatactattataata |
569 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
50554862 |
ctttgagagctaaggtatacagtgagcttattatataattattcatacgaaaataaatatcactgattgaagaaattaactaacatatactattataata |
50554961 |
T |
|
| Q |
570 |
ggtgaagttagctgaggatatggtcactagaacctctttcaccacatcactaaacaatcagtttcttcataatcaatgtcaaatgagcacaccaccacaa |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50554962 |
ggtgaagttagctgaggatatggtcactagaagctctttcaccacatcactaaataatcaatttcttcataatcaatgtcaaatgagcacaccaccacaa |
50555061 |
T |
|
| Q |
670 |
ctcaacatgactactaatattcgccgcatgccacatgtttcgccaaccatcaacgtccagcagggaaatagtg |
742 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50555062 |
ctcaac------------attcgccgcatgccacatgtttcgccaaccatcaacttccagcagggaaatagtg |
50555122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 319 - 506
Target Start/End: Original strand, 50817326 - 50817513
Alignment:
| Q |
319 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
418 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |
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|
| T |
50817326 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50817425 |
T |
|
| Q |
419 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtatacagtgagctta |
506 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
50817426 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtatacggagagctta |
50817513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 319 - 506
Target Start/End: Complemental strand, 50858538 - 50858351
Alignment:
| Q |
319 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
418 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
50858538 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50858439 |
T |
|
| Q |
419 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtatacagtgagctta |
506 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
50858438 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtatacggagagctta |
50858351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 568 - 742
Target Start/End: Original strand, 50817528 - 50817702
Alignment:
| Q |
568 |
taggtgaagttagctgaggatatggtcactagaacctctttcaccacatcactaaacaatcagtttcttcataatcaatgtcaaatgagcacaccaccac |
667 |
Q |
| |
|
||||||||||||| || |||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50817528 |
taggtgaagttagtcaagcatatagtcactagaagctctttcatcacatcgctaaacaatcagtttcttcataatcaatgtcaaatgagcacaccgccac |
50817627 |
T |
|
| Q |
668 |
aactcaacatgactactaatattcgccgcatgccacatgtttcgccaaccatcaacgtccagcagggaaatagtg |
742 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
50817628 |
aactcaacacgactactagtattcgctgcatgccacatgtttcaccaaccatcaatgtccagcagggaaatagtg |
50817702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 568 - 742
Target Start/End: Complemental strand, 50858336 - 50858162
Alignment:
| Q |
568 |
taggtgaagttagctgaggatatggtcactagaacctctttcaccacatcactaaacaatcagtttcttcataatcaatgtcaaatgagcacaccaccac |
667 |
Q |
| |
|
||||||||||||| || |||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50858336 |
taggtgaagttagtcaagcatatagtcactagaagctctttcatcacatcgctaaacaatcagtttcttcataatcaatgtcaaatgagcacaccgccac |
50858237 |
T |
|
| Q |
668 |
aactcaacatgactactaatattcgccgcatgccacatgtttcgccaaccatcaacgtccagcagggaaatagtg |
742 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
50858236 |
aactcaacacgactactagtattcgctgcatgccacatgtttcaccaaccatcaatgtccagcagggaaatagtg |
50858162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 50816972 - 50817093
Alignment:
| Q |
180 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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|
| T |
50816972 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50817071 |
T |
|
| Q |
280 |
ggtaactagtcaatgttttgga |
301 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
50817072 |
ggtaactaatcaatgttttgga |
50817093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 50858892 - 50858771
Alignment:
| Q |
180 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
50858892 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50858793 |
T |
|
| Q |
280 |
ggtaactagtcaatgttttgga |
301 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
50858792 |
ggtaactaatcaatgttttgga |
50858771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 363 - 495
Target Start/End: Complemental strand, 1130656 - 1130524
Alignment:
| Q |
363 |
aggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
462 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||| ||| ||| |||| ||| |||| |||||||||| || ||| | || || |||||||| ||||| |
|
|
| T |
1130656 |
aggttgaacaattgaggctggaaaatgcaagcctatttaagcagcttacagatgccagccaacaatttcgcgatgctaacactaacaaccgagtactaaa |
1130557 |
T |
|
| Q |
463 |
atcagatgtagaagctttgagagctaaggtata |
495 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1130556 |
atccgatgttgaagctttgagagctaaggtata |
1130524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 1131584 - 1131520
Alignment:
| Q |
54 |
gatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaa |
118 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
1131584 |
gatccatctgatgaagatgatgaagcaggtccttgtgaacaaagtacaaaccctgttgatatgaa |
1131520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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