View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19862_low_2 (Length: 692)
Name: NF19862_low_2
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19862_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 48479165 - 48479839
Alignment:
| Q |
1 |
tttgccctgttttggcactgcaccacaaaagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaatcaatgaaagattttctataagaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48479165 |
tttgccctgttttggccctgcaccacaaaagtctatgccttgaaagtcaaatcgtcttgccgttctgatggaggaatcaatgaaagattttctataagaa |
48479264 |
T |
|
| Q |
101 |
gattggtttatcaacgagttaaaaagtgaagaattttctcctccagtgtagattgataaaagagatgtaacagaaggattttgaagctttactctggtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479265 |
gattggtttatcaacgagttaaaaagtgaagaattttctcctccagtgtagattgatagaagagatgtaacagaaggattttgaagctttactctggtgg |
48479364 |
T |
|
| Q |
201 |
tgaaggagtcaaatttagaatactcagagttatttataaagatgctgtagtctgtggaatttatgagagcaaaaacacataagaggtgtgtgaaaagtgt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
48479365 |
tgaaggagtcgaatttagaatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgt |
48479464 |
T |
|
| Q |
301 |
tgattttatctccgaagcttccatttcattactggaaaaataataaccagctttaacccaggaagttgtgtctgcaattaagtaagatgtgagaaagagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479465 |
tgattttatctccgaagcttccatttcattactggaaaaataataaccagctttaacccaggaagttgtgtctgcaattaagtaagatgtgagaaagagg |
48479564 |
T |
|
| Q |
401 |
aagacaaggatgatgatagcaaaatgttttgaaaacattgtattgtattgtttaaggaatctcaagtcaagactccttaaccttaaccctgtggtgtgag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479565 |
aagacaaggatgatgatagcaaaatgttttgaaaacattgtattgtattgtttaaggaatctcaagtcaagactccttaaccttaaccctgtggtgtgag |
48479664 |
T |
|
| Q |
501 |
acaaatgtatatgtattacgagttgccaaaaccaaacacactttctttctacgtggagaacggaggtgcgtaactactcttaggaccggatgtaatcatc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479665 |
acaaatgtatatgtattacgagttgccaaaaccaaacacactttctttctacgtggagaacggaggtgcgtaactactcttaggaccggatgtaatcatc |
48479764 |
T |
|
| Q |
601 |
aattggacaatttgaccagtactaaggaaaataaatatctttccgttcttggaggactcacacgcttattagtat |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48479765 |
aattggacaatttgaccagtactaaggaaaataaatatctttccgttcttggaggactcacacgcttattagtat |
48479839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 48883179 - 48882729
Alignment:
| Q |
1 |
tttgccctgttttggcactgcaccacaaaagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaatcaatgaaagattttctataagaa |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883179 |
tttgccctgttttagccctgcaccacaaaagtctatgccttgaaagtcaaatcgtcttgccgttctgatggaggaatcaatgaaagattttctataagaa |
48883080 |
T |
|
| Q |
101 |
gattggtttatcaacgagttaaaaagtgaagaattttctcctccagtgtagattgataaaagagatgtaacagaaggattttgaagctttactctggtgg |
200 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883079 |
gattggtttaacaatgagttaaaaagtgaagaattttgtcctccagtgtagattgataaaagagatgtaacagaaggattttgaagctttactctggtgg |
48882980 |
T |
|
| Q |
201 |
tgaaggagtcaaatttagaatactcagagttatttataaagatgctgtagtctgtggaatttatgagagcaaaaacacataagaggtgtgtgaaaagtgt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
48882979 |
tgaaggagtcgaatttagaatactcagagtcatttgtaaagatgatgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgt |
48882880 |
T |
|
| Q |
301 |
tgattttatctccgaagcttccatttcattactggaaaaataataaccagctttaacccaggaagttgtgtctgcaattaagtaagatgtgagaaagagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| || |||||||||||| ||||||| |
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|
| T |
48882879 |
tgattttatctccgaagcttccatttcattactggaaaaataataaccggcttttacccaaaaagttgtgtctgattttgagtaagatgtgaaaaagagg |
48882780 |
T |
|
| Q |
401 |
aagacaaggatgatgatagcaaaatgttttgaaaacattgtattgtattgt |
451 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48882779 |
aagacagggatgatgatagcgaaatgttttgaaaacattgtattgtattgt |
48882729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 48470803 - 48471256
Alignment:
| Q |
1 |
tttgccctgttttggcactgcaccacaaaagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaatcaatgaaagattttctataagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48470803 |
tttgccctgttttggcactgcaccacaaaagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaaccaatgaaagattttctataagaa |
48470902 |
T |
|
| Q |
101 |
gattggtttatcaacgagttaaaaagtgaagaattttctcctccagtgtagattgataaaagagatgtaacagaaggattttgaagctttactctggtgg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
48470903 |
gattggtttatcaatgagttaaaaagtgaagaattttgtcctccagtgtagattgataaaagagatgtaacagatgggttttgaagctttactcttctgg |
48471002 |
T |
|
| Q |
201 |
tgaaggagtcaaatttagaatactcagagttatttataaagatgctgtagtctgtggaatttatgagagcaaaaacacataagaggtgtgtgaaaagtgt |
300 |
Q |
| |
|
||||||| | ||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
48471003 |
tgaaggacgcgaatctataatactcagagtcatttataaagatgctgtagtctgtggaatttatgaaagcaaaagcacataagaggtgtgtgaaaagtgt |
48471102 |
T |
|
| Q |
301 |
tgattttatctccgaagcttccatttcattactggaaaaataataaccagctttaacccaggaagttgtgtctgcaattaagtaagatgtgagaaagagg |
400 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48471103 |
tgattttatctctgaagcttcaatttcattactggaaaaataataaccagatttaacccaggaagttgtgtctgcaattgagtaagatgtgagaaagagg |
48471202 |
T |
|
| Q |
401 |
aagacaaggatgatgatagcaaaatgttttgaaaacattgtattgtattgtttaagga |
458 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
48471203 |
aagacaag---gaagatagaaaaatgttttgaaaacattgt-tagtattgtttaagga |
48471256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 442
Target Start/End: Original strand, 48487656 - 48488075
Alignment:
| Q |
23 |
ccacaaaagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaatcaatgaaagattttctataagaagattggtttatcaacgagttaa |
122 |
Q |
| |
|
|||| |||||||||||||||||| || | | |||||||||| ||||||| ||||||||||||||||| || | ||||||||||||||||| ||| || |
|
|
| T |
48487656 |
ccacgaaagtctatgccttgaaacccatagtttcttgctgttttgatggaagaatcaatgaaagatttcctgttagaagattggtttatcagtgaggaaa |
48487755 |
T |
|
| Q |
123 |
aaagtgaagaattttctcctccagtgtagattgataaaagagatgtaacagaaggattttgaagctttactctggtggtgaaggagtcaaatttagaata |
222 |
Q |
| |
|
||| |||||| |||||| | ||||||||||| | ||||| ||||||||| |||||||||||||||||| | |||| |||| | ||||| | |
|
|
| T |
48487756 |
aaactgaagagttttctgttttggtgtagattgaaagaagagttgtaacagatggattttgaagctttactgtattggtaaaggtggagaatttgtgttc |
48487855 |
T |
|
| Q |
223 |
ctcagagttatttataaagatgctgtagtctgtggaatttatgagagcaaaaacacataagaggtgtgtgaaaagtgttgattttatctccgaagcttcc |
322 |
Q |
| |
|
||||| || |||||||| |||||| |||||| ||||| | ||||||| ||||||| |||||||||||||| | |||||||| || |||||| |
|
|
| T |
48487856 |
ttcagatgagttaataaagatattgtagtttgtggagtttataaaagcaaaagcacataaaaggtgtgtgaaaagattggattttatgtcagaagctgaa |
48487955 |
T |
|
| Q |
323 |
atttcattactggaaaaataataaccagctttaacccaggaagttgtgt---ctgcaattaagtaagatgtgagaaagaggaagacaaggatgatgatag |
419 |
Q |
| |
|
|||||| | | ||| | |||||||||||||| | ||| |||||||||| |||||| | ||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
48487956 |
atttcactgcctgaatagtaataaccagctttgatccaagaagttgtgtctgctgcaaatgagtgagatgtgagaaagaggaagacaag---gaagatag |
48488052 |
T |
|
| Q |
420 |
caaaatgttttgaaaacattgta |
442 |
Q |
| |
|
||||||| ||||||| ||||||| |
|
|
| T |
48488053 |
caaaatgatttgaaatcattgta |
48488075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 656
Target Start/End: Original strand, 48471395 - 48471441
Alignment:
| Q |
610 |
atttgaccagtactaaggaaaataaatatctttccgttcttggagga |
656 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48471395 |
atttgacgggtactaaggaaaataaatacctttccgttcttggagga |
48471441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 538
Target Start/End: Original strand, 48471304 - 48471345
Alignment:
| Q |
497 |
tgagacaaatgtatatgtattacgagttgccaaaaccaaaca |
538 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48471304 |
tgagacaaatgtatatgtattacatgttgccaaaaccaaaca |
48471345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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