View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19862_low_3 (Length: 437)
Name: NF19862_low_3
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19862_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 45 - 437
Target Start/End: Original strand, 18062005 - 18062403
Alignment:
| Q |
45 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatcta |
144 |
Q |
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| T |
18062005 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatcta |
18062098 |
T |
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| Q |
145 |
acatcaaatctgtnnnnnnntctgtaatcaaatctataactggacttgtggaatttttcatttttatcctcctcctgcggannnnnnncaatgatattct |
244 |
Q |
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| T |
18062099 |
acatcaaatctgtaatcaaatctgtaatcaaatctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattct |
18062198 |
T |
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| Q |
245 |
c------------tataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
332 |
Q |
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| T |
18062199 |
caatgatattatgtataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
18062298 |
T |
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| Q |
333 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaattctcactattctttttacaaccccgaca |
432 |
Q |
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| T |
18062299 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaattctcactattgtttttacaaccctgaca |
18062398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 233 - 437
Target Start/End: Original strand, 27008459 - 27008663
Alignment:
| Q |
233 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
332 |
Q |
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| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
27008558 |
T |
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| Q |
333 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaattctcactattctttttacaaccccgaca |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
27008559 |
actattactatcgctaactaaaaaagttttatcagatagtaaattagatatgttcatgtctataactagaattctcactattgtttttacaaccctgaca |
27008658 |
T |
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| Q |
433 |
tctac |
437 |
Q |
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||||| |
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| T |
27008659 |
tctac |
27008663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
| Q |
45 |
ttctaaaatgtcactagccttttgg-agcttatcatcatcat |
85 |
Q |
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| T |
18061716 |
ttctaaaatgtcactagccttttggtagcttatcatcatcat |
18061757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
188 |
acttgtggaatttttcatttttatcctcctcct |
220 |
Q |
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| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
261 |
aataccgatttcagaaagcatataaccttcaatacaact |
299 |
Q |
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| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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