View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19862_low_4 (Length: 345)

Name: NF19862_low_4
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19862_low_4
NF19862_low_4
[»] chr3 (9 HSPs)
chr3 (16-327)||(54563159-54563470)
chr3 (24-231)||(44493363-44493570)
chr3 (74-302)||(19822578-19822806)
chr3 (112-179)||(4485684-4485751)
chr3 (103-191)||(36788817-36788905)
chr3 (112-191)||(49640937-49641016)
chr3 (139-313)||(49497740-49497914)
chr3 (40-304)||(12528243-12528507)
chr3 (40-161)||(14483726-14483847)
[»] chr5 (2 HSPs)
chr5 (15-320)||(22787701-22788006)
chr5 (101-230)||(13573038-13573167)
[»] chr8 (4 HSPs)
chr8 (58-307)||(36307666-36307915)
chr8 (24-305)||(9529612-9529893)
chr8 (55-152)||(13813392-13813489)
chr8 (139-191)||(29337620-29337672)
[»] chr1 (3 HSPs)
chr1 (50-307)||(38490531-38490788)
chr1 (253-299)||(2004190-2004236)
chr1 (142-191)||(41339249-41339298)
[»] chr7 (6 HSPs)
chr7 (112-306)||(8863847-8864041)
chr7 (142-306)||(29960838-29961004)
chr7 (24-231)||(26401767-26401974)
chr7 (112-191)||(17244211-17244290)
chr7 (142-221)||(44674044-44674123)
chr7 (142-203)||(48768385-48768446)
[»] chr6 (3 HSPs)
chr6 (142-307)||(11605788-11605953)
chr6 (140-302)||(26905877-26906039)
chr6 (142-191)||(20928462-20928511)
[»] chr4 (4 HSPs)
chr4 (40-307)||(27011343-27011607)
chr4 (103-191)||(14262347-14262435)
chr4 (139-172)||(17779530-17779563)
chr4 (55-155)||(28859014-28859114)
[»] scaffold0381 (1 HSPs)
scaffold0381 (40-307)||(8178-8443)
[»] chr2 (1 HSPs)
chr2 (103-194)||(11551664-11551755)
[»] scaffold0011 (1 HSPs)
scaffold0011 (139-191)||(188208-188260)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 54563470 - 54563159
Alignment:
Q  16 atcaccaccattttagcggtcagagctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctata 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  54563470 atcaccaccattttagcggtcaaagctgtcttgggtaccggtaagtatttaggaatgtcgtctatgattggaagagataggacaaccactttcgcctata 54563371  T
Q  116 ttaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattcc 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54563370 ttaaggaccgtgtgtggcaacgcattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagccattcc 54563271  T
Q  216 ttcctatgttatgagtcattttcagttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaaatactcgt 315  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54563270 ttcctatgttatgagtctttttcagttaccttccacattgattacttctatcgagagaatgattaattcattttggtggggtcatggcagaaatactcgt 54563171  T
Q  316 agaggcattaat 327  Q
    ||||||||||||    
T  54563170 agaggcattaat 54563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 44493363 - 44493570
Alignment:
Q  24 cattttagcggtcagagctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggac 123  Q
    ||||||||||||| ||||||| |||||||| || ||||| ||||| ||| ||||||||||||| |||||||| ||| |||| || || |||||||  |||    
T  44493363 cattttagcggtccgagctgttttgggtactggcaagtatttaggcatgccgtctatgattggcagagatagaacaaccacatttgcttatattatagac 44493462  T
Q  124 cgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatg 223  Q
    || ||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||  ||||| || ||||    
T  44493463 cgggtgtggcaacatattaattcgtggagtagcaagtgcctttctaaggcagggcgtgaagttatgatcaagtctgtgctccaagctattccgtcttatg 44493562  T
Q  224 ttatgagt 231  Q
    ||||||||    
T  44493563 ttatgagt 44493570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 302
Target Start/End: Complemental strand, 19822806 - 19822578
Alignment:
Q  74 cgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggc 173  Q
    |||||||||| ||||||||||||||  ||||||| ||||| || || || |||||||||||| | |||||||||||||| || ||||| || ||||||||    
T  19822806 cgtctatgataggaagagataggacctccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgtctatctaaggc 19822707  T
Q  174 agggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcatttt-cagttaccttccacgttgattacttctatcgagag 272  Q
     |||| ||| || ||||||||||||||||| ||||  |||| ||||||||| ||||| |||||| ||  |||||  ||| || |||||  |||| ||  |    
T  19822706 ggggcatgaggtcatgatcaagtcggttcttcaagctattctttcctatgtcatgag-cattttccaactacctagcactttaattacgactattgaacg 19822608  T
Q  273 aatgattaattcgttttggtggggtcatgg 302  Q
    ||||||||| |||||| |||||||||||||    
T  19822607 aatgattaactcgtttcggtggggtcatgg 19822578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 4485751 - 4485684
Alignment:
Q  112 tatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcg 179  Q
    ||||||||||||||||||||||||   || |||||||||||||| ||||||||||| |||||||||||    
T  4485751 tatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcagggcg 4485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 36788817 - 36788905
Alignment:
Q  103 actttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    |||||||| |||||||| |||||||||||| |  | |||||||| |||||| ||||||| || ||||| |||||| ||||||| |||||    
T  36788817 actttcgcttatattaaagaccgtgtgtggaataaaattaattcatggagtggtaagtgtctttctaaagcagggtgtgaagtaatgat 36788905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 49640937 - 49641016
Alignment:
Q  112 tatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    ||||| ||||| || ||||||||  | ||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||    
T  49640937 tatataaaggatcgcgtgtggcagaaaattaattcttggagtggtaagtgtctctctaaagcaggtcgtgaggttatgat 49641016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 49497740 - 49497914
Alignment:
Q  139 attaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttc 238  Q
    |||||||||||||||||||| ||  | ||||||||||||||||| |||||||| || |  ||  | || | |||| |||| |||||||||||   |||||    
T  49497740 attaattcttggagtagtaaatgtttatctaaggcagggcgtgaggttatgattaaatatgtcttgcaggccattacttcgtatgttatgagcatttttc 49497839  T
Q  239 agttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaaatactc 313  Q
    |||||||  | || || |||| |  |||||| |  ||||| ||||| || |||||||||||||| |||| |||||    
T  49497840 agttaccaactactttaattaatattatcgaaaagatgatgaattccttctggtggggtcatggtagaactactc 49497914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 304
Target Start/End: Complemental strand, 12528507 - 12528243
Alignment:
Q  40 gctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacaca 139  Q
    ||||| ||||||||  ||||||| ||||| ||| | || || || ||||||||||| ||| | |||||  | |  ||||| ||| |||||||||||   |    
T  12528507 gctgttttgggtacaagtaagtatttagggatgccatccataataggaagagatagaacaactactttttctttcattaaagactgtgtgtggcaaagga 12528408  T
Q  140 ttaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttca 239  Q
    |||| ||||||||||| |||||||| || ||||| || || || |||||||| ||||| || || ||||  || || || ||||||||||||   || ||    
T  12528407 ttaactcttggagtagcaagtgcctttcaaaggcgggacgggaggttatgattaagtccgtacttcaagctataccatcttatgttatgagtttgttcca 12528308  T
Q  240 gttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggca 304  Q
      ||||    | | | ||||| || |||||||| ||||| ||||||||||||||||| |||||||    
T  12528307 aataccagatatgcttattacatccatcgagaggatgataaattcgttttggtgggggcatggca 12528243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 14483726 - 14483847
Alignment:
Q  40 gctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacaca 139  Q
    ||||| ||||||||  ||||||||||||| ||| | || ||||| || ||||||||||  || |||||  | | ||| || |||| ||||||||||   |    
T  14483726 gctgttttgggtacaagtaagtacttaggtatgccatccatgatagggagagataggaaggctactttttcttttatcaaagaccatgtgtggcaaagga 14483825  T
Q  140 ttaattcttggagtagtaagtg 161  Q
    |||| |||||||||||||||||    
T  14483826 ttaactcttggagtagtaagtg 14483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 22788006 - 22787701
Alignment:
Q  15 catcaccaccattttagcggtcagagctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctat 114  Q
    |||||||||||||||||| ||||||| ||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||| |||| || || |||    
T  22788006 catcaccaccattttagcagtcagagttgtcttgggcactggtaagtatttaggaatgccgtctatgattggaagagataggacatccacatttgcttat 22787907  T
Q  115 attaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattc 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22787906 attaaggaccgtgtgtggcatcacattaattcttggagtagtaagtgcctatctaaggcaggacgtgaagttacgatcaagtcggttctccaagccattc 22787807  T
Q  215 cttcctatgttatgagtcattttcagttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaaatactcg 314  Q
    |||||||||||||||||| ||||||  || | |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||  ||||     
T  22787806 cttcctatgttatgagtctttttcaactatcgtccacgtttattacctctatcgacagaatgattaattcattttggtggggtcatggcagaaccactca 22787707  T
Q  315 tagagg 320  Q
    ||||||    
T  22787706 tagagg 22787701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 13573038 - 13573167
Alignment:
Q  101 ccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggt 200  Q
    ||||||| || |||||||||||  | || |||||  | |||||||||| | ||||||||||| | || || |||||||||||||||||||| || |||||    
T  13573038 ccacttttgcttatattaaggaaagagtttggcagaagattaattcttagggtagtaagtgcttatccaaagcagggcgtgaagttatgattaaatcggt 13573137  T
Q  201 tctccaagtcattccttcctatgttatgag 230  Q
    | | || | ||| || || |||||||||||    
T  13573138 tttgcaggccatcccctcatatgttatgag 13573167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 58 - 307
Target Start/End: Complemental strand, 36307915 - 36307666
Alignment:
Q  58 aagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagta 157  Q
    ||||| ||||| ||| |||| ||||||||  |  |||| ||| ||||||| || ||||||||||| ||||||||||||   |||||||||||||||||||    
T  36307915 aagtatttaggtatgccgtccatgattggtcgtaatagaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagtagta 36307816  T
Q  158 agtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttcagttaccttccacgttgat 257  Q
    |||| |||||||| ||||| || ||||||||||| ||||| |||||||||| |||||||||||| || |||||||  || || |||||  | |||||| |    
T  36307815 agtgtctctctaaagcaggtcgggaagttatgataaagtcagttctccaagccattccttcctacgtcatgagtctcttccacttaccaactacgttgtt 36307716  T
Q  258 tacttctatcgagagaatgattaattcgttttggtggggtcatggcagaa 307  Q
    |||| | ||||| |||||||| || |||||||||||||||||||| ||||    
T  36307715 tactaccatcgaaagaatgatgaactcgttttggtggggtcatggtagaa 36307666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 9529612 - 9529893
Alignment:
Q  24 cattttagcggtcagagctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggac 123  Q
    ||||||||||||  | ||||| || |||||||| ||||| |||| |||| | ||||||||| | || ||||| ||| |||| || || || ||||||||     
T  9529612 cattttagcggttcgtgctgttttaggtaccggcaagtatttagaaatgccatctatgattaggagggatagaacaaccacatttgcttacattaaggat 9529711  T
Q  124 cgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatg 223  Q
    || || ||||||   ||||| || |||||||| |||||  | || |||||| ||   || |||||||||||||| || || |||| |||||| || ||||    
T  9529712 cgagtttggcaaagaattaactcatggagtagcaagtgtttgtccaaggcaaggtacgaggttatgatcaagtcagtccttcaagccattccctcatatg 9529811  T
Q  224 ttatgagtcattttcagttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcag 305  Q
    |||||||||  | ||||||||| |||||||| || |||  ||||||  ||||||| ||  | |||||| |||| ||||||||    
T  9529812 ttatgagtctgtatcagttaccctccacgttaatcactaatatcgaacgaatgatgaacacattttggagggggcatggcag 9529893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 13813489 - 13813392
Alignment:
Q  55 ggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttggag 152  Q
    |||||||| ||||| ||| | || ||||||||| | |||||||| |||||||| || ||||| ||||||||||||||||||   || |||||||||||    
T  13813489 ggtaagtatttaggtatgccttccatgattggacgggataggacggccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggag 13813392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 29337672 - 29337620
Alignment:
Q  139 attaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    ||||||||||||||| ||||||| |||||||| | ||| ||||| ||||||||    
T  29337672 attaattcttggagtggtaagtgtctctctaaagtaggtcgtgaggttatgat 29337620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 307
Target Start/End: Complemental strand, 38490788 - 38490531
Alignment:
Q  50 gtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttg 149  Q
    ||||||| ||||| ||||| ||| |||| ||||| ||  | ||||| ||| ||||||| || ||||||||||| ||||||||||||   |||||||||||    
T  38490788 gtaccggaaagtatttaggtatgccgtccatgatcggtcgtgatagaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttg 38490689  T
Q  150 gagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttcagttaccttcc 249  Q
    |||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||| |||| ||||||||| || || |||||||  || || |||||  |     
T  38490688 gagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagccattccttcttacgtcatgagtctcttccacttaccaact 38490589  T
Q  250 acgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaa 307  Q
    ||| |||||||| | ||||| |||||||| || |||||||||||||||||||| ||||    
T  38490588 acgctgattactaccatcgaaagaatgatgaactcgttttggtggggtcatggtagaa 38490531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 2004236 - 2004190
Alignment:
Q  253 ttgattacttctatcgagagaatgattaattcgttttggtggggtca 299  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  2004236 ttgattactgctatcgagcgaatgattaattcattttggtggggtca 2004190  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 41339249 - 41339298
Alignment:
Q  142 aattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    |||||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  41339249 aattcttggagtggtaagtgtctatctaagggagggcgtgaggttatgat 41339298  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 8864041 - 8863847
Alignment:
Q  112 tatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtca 211  Q
    ||||||||||||||||||||||||   || |||||||||||||| ||||||||||| |||||| | || ||  ||||||| ||||| ||||| |||| ||    
T  8864041 tatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcacgacgggagtttatgattaagtctgttctacaagcca 8863942  T
Q  212 ttccttcctatgttatgagtcattttcagttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcaga 306  Q
    |||| || ||||||||||| | |||||| |||||| ||||| | || ||  ||||||| || ||||| ||||| ||||||||||| |||| ||||    
T  8863941 ttccatcttatgttatgagcctttttcaattacctaccacgcttatcaccactatcgaaaggatgatgaattcattttggtgggggcatgacaga 8863847  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 29960838 - 29961004
Alignment:
Q  142 aattcttggagta--gtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttca 239  Q
    |||||||||||||  | ||||||||||| ||||||||||| ||  ||||||| ||||| ||||| |||| |||||| || ||||||||||| | ||||||    
T  29960838 aattcttggagtatagcaagtgcctctcaaaggcagggcgggagattatgattaagtctgttctacaagccattccgtcttatgttatgagcctttttca 29960937  T
Q  240 gttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcaga 306  Q
     |||||| | ||| | || ||  ||||||| || ||||| ||||| ||||||||||| |||||||||    
T  29960938 attacctactacgcttatcaccactatcgaaaggatgatgaattcattttggtgggggcatggcaga 29961004  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 26401767 - 26401974
Alignment:
Q  24 cattttagcggtcagagctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggac 123  Q
    ||||||||||||| | ||||| || |||||||||||||| ||||||||| | ||||||||||| |  ||||| | || ||| ||  | || |||||||||    
T  26401767 cattttagcggtccgtgctgttttaggtaccggtaagtatttaggaatgccatctatgattgggatggatagaatagacacattttcttacattaaggac 26401866  T
Q  124 cgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatg 223  Q
    || || ||||||   ||||| || |||||||| |||||  | || || |||||||| || |||||||||||||| |  || |||| |||||| || ||||    
T  26401867 cgggtttggcaaagaattaactcatggagtagcaagtgtttgtccaaagcagggcgcgaggttatgatcaagtcagcccttcaagccattccctcatatg 26401966  T
Q  224 ttatgagt 231  Q
    || |||||    
T  26401967 ttttgagt 26401974  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 17244290 - 17244211
Alignment:
Q  112 tatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    ||||| ||||| || ||||||||  | ||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||    
T  17244290 tatataaaggatcgggtgtggcagaaaattaattcttggagtggtaagtgtctctctaaagcaggtcgtgaggttatgat 17244211  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 44674044 - 44674123
Alignment:
Q  142 aattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttccta 221  Q
    ||||||||||| || |||||  | || |||| ||||||  |||||||||||||||||||||| |||| |||||| |||||    
T  44674044 aattcttggagcagcaagtgtttgtccaaggtagggcgcaaagttatgatcaagtcggttcttcaagccattccctccta 44674123  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 48768385 - 48768446
Alignment:
Q  142 aattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttct 203  Q
    ||||||||||||||||| ||  | |||||||||||||| || ||||||||||| || |||||    
T  48768385 aattcttggagtagtaattgtttatctaaggcagggcgcgaggttatgatcaaatccgttct 48768446  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 11605953 - 11605788
Alignment:
Q  142 aattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttcagt 241  Q
    |||||||||||||||||||| || || || |||||||||||||| ||||| || ||||| || ||||  || ||||| ||||| |||||   |||||| |    
T  11605953 aattcttggagtagtaagtgtctttccaaagcagggcgtgaagtcatgattaaatcggtccttcaagctatcccttcgtatgtcatgagcatttttcaat 11605854  T
Q  242 taccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaa 307  Q
    | ||  | ||  | |||  | | ||||||| |||||| ||||||||||||||||||||||||||||    
T  11605853 tgccagcaactcttattgataccatcgagaaaatgatgaattcgttttggtggggtcatggcagaa 11605788  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 302
Target Start/End: Original strand, 26905877 - 26906039
Alignment:
Q  140 ttaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttca 239  Q
    |||||||||||||| | |||||| | ||||| |||||||| || |||||||| || || ||||| || |  |||||||| ||||||||||||  ||| ||    
T  26905877 ttaattcttggagtggaaagtgcttgtctaaagcagggcgcgaggttatgataaaatctgttctgcaggcaattccttcttatgttatgagtattttcca 26905976  T
Q  240 gttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatgg 302  Q
    ||| ||  | || ||||| | ||| || ||||  ||||| ||||| |||||||||||||||||    
T  26905977 gttgccaacgactttgatcaattcaattgagaagatgatgaattccttttggtggggtcatgg 26906039  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 20928462 - 20928511
Alignment:
Q  142 aattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    |||||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  20928462 aattcttggagtggtaagtgtctatctaagggagggcgtgaggttatgat 20928511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 307
Target Start/End: Complemental strand, 27011607 - 27011343
Alignment:
Q  40 gctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacaca 139  Q
    ||||| |||||||| ||||||||| |||| ||| |||| ||||| ||||||||||  ||| | || ||  | |  ||||| |||||||||||||||   |    
T  27011607 gctgttttgggtacaggtaagtacctagggatgtcgtccatgataggaagagataaaacatctacattttctttcattaaagaccgtgtgtggcaaagga 27011508  T
Q  140 ttaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttca 239  Q
    |||| |||||||||||||||||||| || ||||| || ||  | ||||| |   |||| ||||| ||||  || || || ||||||||||||| |||  |    
T  27011507 ttaactcttggagtagtaagtgcctttcgaaggcgggacggaaggttatta---agtctgttcttcaagctataccatcttatgttatgagtcttttcta 27011411  T
Q  240 gttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaa 307  Q
    |  |||    ||| | ||||| ||||||||||| ||||| || |||||||||||||| ||||||||||    
T  27011410 gacaccagatacgctcattacatctatcgagaggatgataaactcgttttggtgggggcatggcagaa 27011343  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 14262347 - 14262435
Alignment:
Q  103 actttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    ||||| ||||||||||| |||||||| |||||  | ||||| |||||||||  |||||||||||| ||||||||||| ||||| |||||    
T  14262347 acttttgcctatattaaagaccgtgtctggcagaaaattaactcttggagtgataagtgcctctcaaaggcagggcgagaagtgatgat 14262435  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 17779563 - 17779530
Alignment:
Q  139 attaattcttggagtagtaagtgcctctctaagg 172  Q
    |||||||| |||||||||||||||||||||||||    
T  17779563 attaattcctggagtagtaagtgcctctctaagg 17779530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 28859014 - 28859114
Alignment:
Q  55 ggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagta 154  Q
    ||||||||||||||  || | |||||||| ||||| ||||| ||| |||| || || |||||||| || | ||| |||||| | || |||||||||||||    
T  28859014 ggtaagtacttaggtttgccatctatgatcggaagggatagaacaaccacgtttgcatatattaaagatcatgtttggcaaaaaatcaattcttggagta 28859113  T
Q  155 g 155  Q
    |    
T  28859114 g 28859114  T

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Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 307
Target Start/End: Original strand, 8178 - 8443
Alignment:
Q  40 gctgtcttgggtaccggtaagtacttaggaatgacgtctatgattggaagagataggacagccactttcgcctat-attaaggaccgtgtgtggcaacac 138  Q
    ||||| |||||||| ||||||||| |||| ||| |||| ||||| ||||||||||  ||| | || ||   || | ||||| |||||||||||||||       
T  8178 gctgttttgggtacaggtaagtacctagggatgtcgtccatgataggaagagataaaacatctacatttttctttcattaaagaccgtgtgtggcaaagg 8277  T
Q  139 attaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagtcggttctccaagtcattccttcctatgttatgagtcattttc 238  Q
    ||||| |||||||||||||||||||| || ||||| || ||  | ||||| |   |||| ||||| ||||  || || || ||||||||||||| |||      
T  8278 attaactcttggagtagtaagtgcctttcgaaggcgggacggaaggttatta---agtctgttcttcaagctataccatcttatgttatgagtcttttct 8374  T
Q  239 agttaccttccacgttgattacttctatcgagagaatgattaattcgttttggtggggtcatggcagaa 307  Q
    ||  |||    ||| | ||||| ||||||||||| ||||| || |||||||||||||| ||||||||||    
T  8375 agacaccagatacgctcattacatctatcgagaggatgataaactcgttttggtgggggcatggcagaa 8443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 11551664 - 11551755
Alignment:
Q  103 actttcgcctatattaaggaccgtgtgtggcaacacattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaa 194  Q
    |||||| ||||||| || |||||||| ||| |  | || ||||||||||||||||| ||  | |||||||||||||| ||||||||||||||    
T  11551664 actttctcctatatcaaagaccgtgtctggaagaaaataaattcttggagtagtaaatgtttatctaaggcagggcgcgaagttatgatcaa 11551755  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 188260 - 188208
Alignment:
Q  139 attaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgat 191  Q
    ||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||    
T  188260 attaattcttggagtggtaagtgtctctctaaagcaggtcgtgaggttatgat 188208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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