View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19862_low_5 (Length: 333)

Name: NF19862_low_5
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19862_low_5
NF19862_low_5
[»] chr5 (6 HSPs)
chr5 (1-318)||(30269459-30269776)
chr5 (4-318)||(29363033-29363358)
chr5 (249-315)||(12459975-12460041)
chr5 (256-306)||(37794679-37794729)
chr5 (249-306)||(38728441-38728498)
chr5 (249-312)||(7808538-7808602)
[»] chr6 (10 HSPs)
chr6 (249-315)||(28641723-28641789)
chr6 (253-306)||(33832251-33832304)
chr6 (254-306)||(7931705-7931757)
chr6 (252-306)||(1015441-1015494)
chr6 (253-316)||(8348253-8348318)
chr6 (249-303)||(30863288-30863342)
chr6 (254-316)||(31420974-31421036)
chr6 (265-306)||(1019600-1019641)
chr6 (253-306)||(22743520-22743573)
chr6 (258-306)||(1575934-1575982)
[»] chr3 (7 HSPs)
chr3 (249-315)||(21574520-21574586)
chr3 (265-315)||(36200126-36200176)
chr3 (249-306)||(37273173-37273230)
chr3 (265-318)||(42745065-42745118)
chr3 (271-315)||(24785235-24785279)
chr3 (264-316)||(43116430-43116482)
chr3 (258-306)||(47249469-47249517)
[»] chr2 (6 HSPs)
chr2 (265-317)||(41809235-41809287)
chr2 (253-310)||(11488312-11488367)
chr2 (258-315)||(1647266-1647323)
chr2 (249-306)||(15120222-15120279)
chr2 (255-308)||(30538153-30538206)
chr2 (253-306)||(43065428-43065481)
[»] chr7 (6 HSPs)
chr7 (253-315)||(46082066-46082128)
chr7 (258-306)||(32425352-32425400)
chr7 (265-315)||(7244710-7244760)
chr7 (258-304)||(11047908-11047954)
chr7 (265-302)||(36537951-36537988)
chr7 (258-306)||(15740394-15740442)
[»] scaffold0608 (1 HSPs)
scaffold0608 (253-306)||(9615-9668)
[»] chr1 (10 HSPs)
chr1 (253-306)||(4481969-4482022)
chr1 (249-302)||(38170664-38170717)
chr1 (258-306)||(4699598-4699646)
chr1 (258-306)||(38578567-38578615)
chr1 (252-315)||(16322879-16322942)
chr1 (266-305)||(48816728-48816767)
chr1 (249-306)||(6262777-6262834)
chr1 (254-315)||(11639395-11639456)
chr1 (272-317)||(47877137-47877182)
chr1 (258-306)||(14256769-14256817)
[»] chr4 (4 HSPs)
chr4 (249-305)||(51560263-51560319)
chr4 (255-306)||(1965980-1966031)
chr4 (253-306)||(37575914-37575967)
chr4 (258-306)||(46110242-46110290)
[»] chr8 (6 HSPs)
chr8 (249-304)||(2487982-2488037)
chr8 (251-306)||(2492975-2493030)
chr8 (249-306)||(32840959-32841017)
chr8 (264-305)||(2594986-2595027)
chr8 (249-306)||(30191115-30191172)
chr8 (253-317)||(5069725-5069789)
[»] scaffold0147 (1 HSPs)
scaffold0147 (266-303)||(4926-4963)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 30269459 - 30269776
Alignment:
Q  1 atgaaaactatgtcttaatctgatgagccaaggtagcaacatcacacatgaagatgttaagttatgtcacactgaatgaaagaatcaacccaattgagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  30269459 atgaaaactatgtcttaatctgatgagccaaggtagcaacatcacacatgaagatgttaagttatgtaacactgaatgaaagaatcagcccaattgagta 30269558  T
Q  101 tgaagaaaagaattgcttctttacttgtggcattaactcattgaggcactgaccttagctaaaaatagcttttttagaaatcaagcattgatatgtaata 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30269559 tgaagaaaagaattgcttctttacttgtggcattaactcactgaggcactgaccttagctaaaaatagcttttttagaaatcaagcattgatatgtaata 30269658  T
Q  201 agggcgtttggattcatttatttactgcgataaacactcatgagaatattgggagagcttattaaaacaacttataacatgctcataagttgtttttagc 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30269659 agggcgtttggattcatttatttactgcgataaacactcgtgagaatattgggagagcttattaaaacaacttataacatgcccataagttgtttttagc 30269758  T
Q  301 ttatttgcatgagctttt 318  Q
    ||||||||||||||||||    
T  30269759 ttatttgcatgagctttt 30269776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 29363358 - 29363033
Alignment:
Q  4 aaaactatgtcttaatctgatgagccaaggtagcaacatcacacatgaagatgttaagttatgtcacactgaatgaaagaatcaacccaattgagtatga 103  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| | |||| | | ||||||||||||| ||| ||||||||||||| |    
T  29363358 aaaactatgtcttaatctaatgagccaaggtggcaacgtcacacatgaagatgttcaattatataatactgaatgaaagattcatcccaattgagtataa 29363259  T
Q  104 agaaaagaattgcttctttacttgtggcattaactcattgaggcactgaccttagctaaaaata---------gcttttttagaaatcaagcattgatat 194  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||  |||||||||||||    
T  29363258 agaaaacacttgcttctttacttgtggcattaactcactgaggcactgaccttagctaaaaatagcttctttagcttttttagaatacaagcattgatat 29363159  T
Q  195 gtaataagggcgtttggattcatttatttactgcgataaacactcatgagaatattgggagagcttattaaaacaacttataacatgctcataagttgtt 294  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  29363158 gtaataagggcgtttggattcatttatttactgggataaacactcatgagaatgttgggagagcttatgaaaacaacttatgacatgcccataagttgtt 29363059  T
Q  295 tt--tagcttatttgcatgagctttt 318  Q
    ||   |||||||||||||||||||||    
T  29363058 ttcacagcttatttgcatgagctttt 29363033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 12459975 - 12460041
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||||||| | ||| |||||||||||| ||||| ||||| ||||||||| |||||||| ||| ||||    
T  12459975 ttgggagaacctatgaaaacaacttatgacatgttcatatgttgtttttggcttattttcataagct 12460041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 37794679 - 37794729
Alignment:
Q  256 agcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||| |||||||||||| ||||| ||||||| |||||| |||||||||    
T  37794679 agcttatgaaaacaacttatgacatgttcataagctgttttgagcttattt 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 38728498 - 38728441
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||||||||| |||| | ||||| |||||||| |||| |||||| |||||||||    
T  38728498 ttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttcagcttattt 38728441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 7808602 - 7808538
Alignment:
Q  249 ttgggagagcttattaaaacaacttataaca-tgctcataagttgtttttagcttatttgcatga 312  Q
    |||||||||||||| |||| | ||||||||| || ||||||| |||||| ||||||||| |||||    
T  7808602 ttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttcatga 7808538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 28641723 - 28641789
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||| ||||    
T  28641723 ttggcagagcttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagct 28641789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 33832251 - 33832304
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||| ||||| |||||||||||| ||||| | ||||||||||||||||||||||    
T  33832251 gagaacttatgaaaacaacttatgacatgtttataagttgtttttagcttattt 33832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 7931705 - 7931757
Alignment:
Q  254 agagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||||| |||||||||||| ||||| || ||||||||||| |||||||||    
T  7931705 agagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttattt 7931757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 1015494 - 1015441
Alignment:
Q  252 ggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||||||| |||||||| |||||||||| |||||| |||||| |||||||||    
T  1015494 ggagagcttatcaaaacaacatataacatgc-cataagatgttttcagcttattt 1015441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 8348318 - 8348253
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgttttt--agcttatttgcatgagctt 316  Q
    |||||||||  ||||||||||||||||||  ||||||||||||||  ||||||||| ||| |||||    
T  8348318 gagagcttacgaaaacaacttataacatgaccataagttgttttttcagcttattttcataagctt 8348253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 30863342 - 30863288
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagctta 303  Q
    |||| ||||||||| |||||||||||| |||||  ||||||||||||| ||||||    
T  30863342 ttggtagagcttatgaaaacaacttatgacatgtacataagttgttttcagctta 30863288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 31421036 - 31420974
Alignment:
Q  254 agagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagctt 316  Q
    ||||||||| ||||||||||||  |||  |||||||||||||| ||||||||| ||| |||||    
T  31421036 agagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataagctt 31420974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 1019600 - 1019641
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||||||||||||   ||||||||||||||||||||||    
T  1019600 aaacaacttataacatgtctataagttgtttttagcttattt 1019641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 22743573 - 22743520
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||| || |||||||||||| ||||| ||||||| |||||| |||||||||    
T  22743573 gagagctcatgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 1575982 - 1575934
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||| ||||| ||||||| |||||||| |||||||    
T  1575982 cttatgaaaacaacttatgacatgttcataagctgtttttaacttattt 1575934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 21574586 - 21574520
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||||||||||||| |||||||||||| ||||| ||||||| || ||||||||||||| ||| ||||    
T  21574586 ttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagct 21574520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 36200176 - 36200126
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    ||||||||||| |||||  ||||||||||||| ||||||||| ||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccatgagct 36200126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 37273230 - 37273173
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||||||||||  ||||||||||| |||||  ||||||||||||| | |||||||    
T  37273230 ttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttattt 37273173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 42745118 - 42745065
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagcttatttgcatgagctttt 318  Q
    ||||||||||| ||||| |||||||||||||| | ||||||| ||| |||||||    
T  42745118 aaacaacttatgacatgttcataagttgttttcatcttatttccataagctttt 42745065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 24785279 - 24785235
Alignment:
Q  271 cttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    ||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  24785279 cttatgacatgttcataagttgtttttagcttatttacataagct 24785235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 43116430 - 43116482
Alignment:
Q  264 aaaacaacttataacatgctcataagttgtttttagcttatttgcatgagctt 316  Q
    |||||||||||||||||| || |||||| |||| | ||||||||||| |||||    
T  43116430 aaaacaacttataacatgttcttaagttcttttcaacttatttgcataagctt 43116482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 47249469 - 47249517
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| ||||| |||||| ||||| ||||||||||||||| ||||||||    
T  47249469 cttatgaaaaccacttatgacatgttcataagttgtttttggcttattt 47249517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 41809235 - 41809287
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagcttatttgcatgagcttt 317  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataagcttt 41809287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 11488367 - 11488312
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcat 310  Q
    |||||||||| |||||||||||| |  || |||||||||||||| |||||||||||||    
T  11488367 gagagcttatgaaaacaacttatga--tggtcataagttgttttcagcttatttgcat 11488312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 1647323 - 1647266
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    ||||| |||||| ||||| ||||||||||||| |||||| ||||||||| ||| ||||    
T  1647323 cttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagct 1647266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 15120279 - 15120222
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||||||||||  ||||||||||| ||||| |||| || |||||| |||||||||    
T  15120279 ttgggagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattt 15120222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 30538153 - 30538206
Alignment:
Q  255 gagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgc 308  Q
    ||||||||  ||||||||||| |||||  ||||||||||||| |||||||||||    
T  30538153 gagcttatagaaacaacttatgacatgtccataagttgttttcagcttatttgc 30538206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 43065428 - 43065481
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||||| |||||||||||| |||||  ||||| ||||||| |||||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttattt 43065481  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 46082128 - 46082066
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||||||||| |||||||||||| |||||  ||||||||||||| ||||||||| ||| ||||    
T  46082128 gagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 32425400 - 32425352
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||||||||||||| ||||||||||||  |||||||| |||||||    
T  32425400 cttattaaaacaacttatgacatgctcataaactgtttttatcttattt 32425352  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 7244760 - 7244710
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||    
T  7244760 aaacaatttatgacatgctcataagttgttttcagcttattttcataagct 7244710  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 11047954 - 11047908
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttat 304  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||    
T  11047954 cttataaaaacaacttatgacatgttcataagctgtttttagcttat 11047908  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 36537988 - 36537951
Alignment:
Q  265 aaacaacttataacatgctcataagttgtttttagctt 302  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  36537988 aaacaacttatgacatgttcataagttgtttttagctt 36537951  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 15740394 - 15740442
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||| ||||| ||||||| |||||||| |||||||    
T  15740394 cttatgaaaacaacttatgacatgttcataagctgtttttaacttattt 15740442  T

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Target: scaffold0608 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 9615 - 9668
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  9615 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 9668  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 4482022 - 4481969
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  4482022 gagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 4481969  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 38170664 - 38170717
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagctt 302  Q
    |||||||||||||| |||||| ||||| ||||| |||||||||||||| |||||    
T  38170664 ttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 4699598 - 4699646
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  4699598 cttatgaaaacaacttatgacatgttcataagctgtttttagcttattt 4699646  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 38578615 - 38578567
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||||||||  |||||||||||||| |||||||||    
T  38578615 cttatgaaaacaacttataacatattcataagttgttttgagcttattt 38578567  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 16322942 - 16322879
Alignment:
Q  252 ggagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    |||||| ||||  |||||||||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  16322942 ggagagattatcgaaacaacttatgtcatgcacataagttgtttttagcttatttccataagct 16322879  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 48816767 - 48816728
Alignment:
Q  266 aacaacttataacatgctcataagttgtttttagcttatt 305  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  48816767 aacaacttataacatgttcataagttgttttgagcttatt 48816728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 6262834 - 6262777
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||||||||| |||| ||||||| | |||  ||||||||||||| |||||||||    
T  6262834 ttgggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 11639395 - 11639456
Alignment:
Q  254 agagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagct 315  Q
    ||||||||| |||||| ||||| |||||  |||||| |||||||||||||||| ||| ||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagct 11639456  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 47877182 - 47877137
Alignment:
Q  272 ttataacatgctcataagttgtttttagcttatttgcatgagcttt 317  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||    
T  47877182 ttatgacatgctcataagttgttttcagcttattttcataagcttt 47877137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 14256769 - 14256817
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||  ||||| |||||||||||||| |||||||||    
T  14256769 cttataaaaacaacttaggacatggtcataagttgttttcagcttattt 14256817  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 51560263 - 51560319
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttatt 305  Q
    |||||||| ||||| |||||| ||||| ||||| |||||| ||||||||||||||||    
T  51560263 ttgggagaccttatgaaaacaccttatcacatgttcataacttgtttttagcttatt 51560319  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 1966031 - 1965980
Alignment:
Q  255 gagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||||| |||||||||||| ||||| ||||||| |||||||| |||||||    
T  1966031 gagcttatgaaaacaacttatgacatgttcataagctgtttttaacttattt 1965980  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 37575914 - 37575967
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||| ||||| |||| |||||||||||| ||||||||||||||| |||| ||||    
T  37575914 gagaacttatgaaaataacttataacatactcataagttgttttcagctcattt 37575967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 46110290 - 46110242
Alignment:
Q  258 cttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||| |||||||||||| | || ||||||||||||||| |||||||||    
T  46110290 cttatgaaaacaacttatgatatactcataagttgttttcagcttattt 46110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 2487982 - 2488037
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttat 304  Q
    |||||||| ||||| |||||||||||||||||| ||| ||  ||||||||||||||    
T  2487982 ttgggagaacttatgaaaacaacttataacatgttcaaaaactgtttttagcttat 2488037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 2493030 - 2492975
Alignment:
Q  251 gggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    |||||| ||| || ||| ||||||||||||| ||||||||||||||| ||||||||    
T  2493030 gggagaacttgtttaaaaaacttataacatgttcataagttgttttttgcttattt 2492975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 32840959 - 32841017
Alignment:
Q  249 ttgggagagcttattaaaacaacttataaca-tgctcataagttgtttttagcttattt 306  Q
    |||||||| ||||| |||||||||||| ||| || |||||||||||||| |||||||||    
T  32840959 ttgggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattt 32841017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 2594986 - 2595027
Alignment:
Q  264 aaaacaacttataacatgctcataagttgtttttagcttatt 305  Q
    |||||||||||| ||||| |||||||||||||| ||||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttatt 2595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 30191115 - 30191172
Alignment:
Q  249 ttgggagagcttattaaaacaacttataacatgctcataagttgtttttagcttattt 306  Q
    ||||||||||||||  ||||||||||| ||||| ||| || ||||||| |||||||||    
T  30191115 ttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttattt 30191172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 5069789 - 5069725
Alignment:
Q  253 gagagcttattaaaacaacttataacatgctcataagttgtttttagcttatttgcatgagcttt 317  Q
    ||||||||||  ||||| ||||||||||| ||||||||  |||| ||||||||| ||| ||||||    
T  5069789 gagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcataagcttt 5069725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 4926 - 4963
Alignment:
Q  266 aacaacttataacatgctcataagttgtttttagctta 303  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  4926 aacaacttataacatgttcataagttgttttcagctta 4963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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