View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19862_low_8 (Length: 282)

Name: NF19862_low_8
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19862_low_8
NF19862_low_8
[»] chr2 (13 HSPs)
chr2 (143-274)||(39646681-39646812)
chr2 (17-132)||(39646476-39646591)
chr2 (17-132)||(45080568-45080683)
chr2 (17-132)||(2110255-2110370)
chr2 (17-132)||(28585833-28585948)
chr2 (17-132)||(43370709-43370824)
chr2 (17-132)||(4828239-4828354)
chr2 (17-132)||(29194023-29194138)
chr2 (17-132)||(42847057-42847172)
chr2 (21-130)||(1779226-1779335)
chr2 (17-132)||(8381466-8381581)
chr2 (17-87)||(43377356-43377426)
chr2 (46-131)||(16964852-16964937)
[»] chr3 (10 HSPs)
chr3 (17-132)||(40496808-40496923)
chr3 (17-132)||(41346082-41346197)
chr3 (17-132)||(51545697-51545812)
chr3 (17-132)||(54014272-54014387)
chr3 (17-132)||(48169759-48169874)
chr3 (17-132)||(48737561-48737676)
chr3 (17-132)||(50676510-50676624)
chr3 (28-132)||(12568169-12568273)
chr3 (28-132)||(13544633-13544737)
chr3 (17-132)||(24709045-24709160)
[»] chr1 (13 HSPs)
chr1 (17-132)||(46370962-46371076)
chr1 (17-132)||(28036851-28036966)
chr1 (17-132)||(1929366-1929481)
chr1 (17-132)||(32045868-32045983)
chr1 (17-132)||(39151047-39151162)
chr1 (17-132)||(40562584-40562699)
chr1 (17-132)||(46862591-46862706)
chr1 (17-132)||(38321680-38321795)
chr1 (17-132)||(38817809-38817924)
chr1 (17-132)||(50777032-50777147)
chr1 (24-137)||(8229093-8229206)
chr1 (17-132)||(9129552-9129667)
chr1 (52-132)||(1207636-1207715)
[»] chr8 (10 HSPs)
chr8 (16-132)||(17493561-17493677)
chr8 (17-132)||(27820808-27820923)
chr8 (17-132)||(38070045-38070160)
chr8 (18-132)||(17336121-17336235)
chr8 (17-132)||(11254535-11254650)
chr8 (17-132)||(12738516-12738631)
chr8 (17-131)||(39906946-39907058)
chr8 (17-132)||(13243696-13243811)
chr8 (17-137)||(9753800-9753920)
chr8 (17-132)||(18575063-18575178)
[»] chr7 (12 HSPs)
chr7 (17-132)||(48838095-48838210)
chr7 (17-132)||(6392306-6392421)
chr7 (17-132)||(29737440-29737555)
chr7 (17-132)||(38276695-38276810)
chr7 (17-132)||(40232265-40232380)
chr7 (17-132)||(4040982-4041097)
chr7 (17-132)||(27596236-27596350)
chr7 (21-132)||(21442952-21443063)
chr7 (17-132)||(24300294-24300409)
chr7 (17-132)||(41427798-41427913)
chr7 (17-132)||(25943797-25943910)
chr7 (17-132)||(31689503-31689618)
[»] chr5 (4 HSPs)
chr5 (17-132)||(42897524-42897639)
chr5 (16-132)||(36982221-36982337)
chr5 (17-132)||(2970815-2970929)
chr5 (16-132)||(14044091-14044207)
[»] chr4 (19 HSPs)
chr4 (17-132)||(3172169-3172284)
chr4 (17-132)||(40071599-40071714)
chr4 (17-132)||(37064903-37065018)
chr4 (17-132)||(54438307-54438422)
chr4 (17-137)||(46870637-46870757)
chr4 (17-132)||(925286-925401)
chr4 (17-132)||(17493788-17493903)
chr4 (17-132)||(32218087-32218202)
chr4 (17-132)||(39788028-39788143)
chr4 (17-132)||(21240361-21240476)
chr4 (17-132)||(47199521-47199636)
chr4 (17-132)||(20789708-20789823)
chr4 (17-132)||(28910306-28910421)
chr4 (17-103)||(52101112-52101198)
chr4 (40-132)||(51744657-51744749)
chr4 (17-132)||(33800933-33801047)
chr4 (25-132)||(34408815-34408922)
chr4 (17-137)||(53509792-53509912)
chr4 (17-132)||(41555497-41555612)
[»] scaffold0318 (1 HSPs)
scaffold0318 (17-132)||(16392-16507)
[»] scaffold1194 (1 HSPs)
scaffold1194 (18-132)||(1014-1128)
[»] scaffold0519 (1 HSPs)
scaffold0519 (17-132)||(10743-10858)
[»] chr6 (12 HSPs)
chr6 (17-132)||(1241144-1241259)
chr6 (17-132)||(1870569-1870684)
chr6 (17-132)||(13042007-13042122)
chr6 (17-132)||(28541737-28541852)
chr6 (21-132)||(7271232-7271343)
chr6 (17-132)||(16435814-16435929)
chr6 (17-115)||(13210396-13210494)
chr6 (17-132)||(29182626-29182741)
chr6 (17-132)||(30736454-30736569)
chr6 (17-132)||(31013645-31013760)
chr6 (25-132)||(12350307-12350414)
chr6 (49-132)||(31833747-31833830)
[»] scaffold0061 (1 HSPs)
scaffold0061 (17-132)||(10167-10282)
[»] scaffold0047 (1 HSPs)
scaffold0047 (17-132)||(69788-69903)
[»] scaffold0532 (1 HSPs)
scaffold0532 (17-132)||(3849-3964)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 39646681 - 39646812
Alignment:
Q  143 tagagttctaactagaaattaaaatcagtccatataccatccaaacgtgtcaatatgaattttatgcatttgaaatcacttttggctttttatctgaaaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39646681 tagagttctaactagaaattaaaatcagtccatataccatccaaacgtgtcaatatcaattttatgcatttgaaatcacttttggctttttatctgaaaa 39646780  T
Q  243 acaaacacacacttcaaaattattttcttctc 274  Q
    ||||||||||||||||||||||||||||||||    
T  39646781 acaaacacacacttcaaaattattttcttctc 39646812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 39646476 - 39646591
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  39646476 tttgttccactacaaacttttacatgaggaccacaaaaagtatttataaggggtaaatttgtcaaattctatttagaaatctgagaatgtcaaatattgt 39646575  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  39646576 gggacaaatatttttt 39646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 45080568 - 45080683
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  45080568 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 45080667  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  45080668 gggacaaatatttttt 45080683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 2110370 - 2110255
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| |||| || ||||||||||||    
T  2110370 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgt 2110271  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  2110270 gggacaaatatttttt 2110255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 28585833 - 28585948
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||| || |||||||||    
T  28585833 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttagaaatctgagaaggttaagtattgt 28585932  T
Q  117 gtgacaaatatttttt 132  Q
    | || |||||||||||    
T  28585933 gggataaatatttttt 28585948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 43370824 - 43370709
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| || |||| ||||||||||||    
T  43370824 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgt 43370725  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  43370724 gggacaaatatttttt 43370709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 4828239 - 4828354
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||| ||||||| | ||||| |||||||||||||||||||| |||||||||||||||||| || |||||||  |||||| ||||| ||||||    
T  4828239 tttgttccactataaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaattttgcttagaaatttgagaaggtcaaatattgt 4828338  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  4828339 gggacaaatatttttt 4828354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 29194138 - 29194023
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | || || |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  29194138 tttgttccactacaaactttaacatcgggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 29194039  T
Q  117 gtgacaaatatttttt 132  Q
    | |||| || ||||||    
T  29194038 gggacacatttttttt 29194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 42847057 - 42847172
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    ||||||||| |||||||||||| ||||  | |||||||||||||||||| ||||||||||||||||||||| ||| ||| |||| || |||||||||| |    
T  42847057 tttgttccattacaaacttttacatggagaacacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgaaaaggtcaagtattat 42847156  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  42847157 gggacaaatatttttt 42847172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 1779226 - 1779335
Alignment:
Q  21 ttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtga 120  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||  ||| | |||||| ||    
T  1779226 ttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgttaaattctgcttagaaatctgagaagatcaggcattgtggga 1779325  T
Q  121 caaatatttt 130  Q
    ||||||||||    
T  1779326 caaatatttt 1779335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 8381466 - 8381581
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||| ||| | |||   |||||||||||||||||||| |||||||| ||||||||| | ||||||||  |||||| ||||||||| ||    
T  8381466 tttgttccactacaaattttaacatgaagaccacaaaaagtatttataaggggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtatcgt 8381565  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  8381566 gggacaaatatttttt 8381581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 43377356 - 43377426
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctg 87  Q
    ||||||||||||||||||||||  |||  || |||||||||||||||||  | ||||||||||||||||||    
T  43377356 tttgttccactacaaacttttacttggagactacaaaaagtatttataagagataaatttgtcaaattctg 43377426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 16964937 - 16964852
Alignment:
Q  46 accacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatattttt 131  Q
    |||||||||||||||||||| ||||||| |||||||||| |  ||| |||  |||||| ||||||||||||| ||| ||| |||||    
T  16964937 accacaaaaagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtattgtgggacgaattttttt 16964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 40496923 - 40496808
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  40496923 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattgt 40496824  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  40496823 gggacaaatatttttt 40496808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 41346197 - 41346082
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  41346197 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 41346098  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  41346097 gggacaaatatttttt 41346082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 51545812 - 51545697
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  51545812 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 51545713  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  51545712 gggacaaatatttttt 51545697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 54014387 - 54014272
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  54014387 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 54014288  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  54014287 gggacaaatatttttt 54014272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 48169874 - 48169759
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| || ||||| ||||||||| || ||||||| ||||||| |||||||||| |    
T  48169874 tttgttccactacaaactttaacatggggaccacaaaaagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattat 48169775  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  48169774 gggacaaatatttttt 48169759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 48737676 - 48737561
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||  ||||||||| |    
T  48737676 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatttgtcaaattctgcttaaaaatctgaaaagatcaagtattat 48737577  T
Q  117 gtgacaaatatttttt 132  Q
      ||||||||||||||    
T  48737576 aagacaaatatttttt 48737561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 50676624 - 50676510
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||| ||||||||| || ||| ||| ||||||| ||||||||||||    
T  50676624 tttgttccactacaaactttaacatggga-ccacaaaaagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgt 50676526  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  50676525 gggacaaatatttttt 50676510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 12568169 - 12568273
Alignment:
Q  28 acaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatat 127  Q
    ||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||| |||||||||    
T  12568169 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatat 12568268  T
Q  128 ttttt 132  Q
    |||||    
T  12568269 ttttt 12568273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 13544633 - 13544737
Alignment:
Q  28 acaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatat 127  Q
    ||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||| |||||||||    
T  13544633 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatat 13544732  T
Q  128 ttttt 132  Q
    |||||    
T  13544733 ttttt 13544737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 24709160 - 24709045
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||| | ||| | ||||||||||||||||||||||| ||||| ||||||||| || ||| ||| ||||||| ||||||||||||    
T  24709160 tttgtttcactacaaactttaacatgaggaccacaaaaagtatttataaaggataaatctgtcaaattttgcttataaatctgagaaggtcaagtattgt 24709061  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  24709060 gggacaaatatttttt 24709045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 46371076 - 46370962
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||    
T  46371076 tttgttccactacaaactttaatatggga-ccacaaaaagtatttataaggggtaaatttgtcaaattttgcttagaaatctgagaaggtcaagtattgt 46370978  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  46370977 gggacaaatatttttt 46370962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 28036851 - 28036966
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| || ||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  28036851 tttgttccactacaaactttaacatggggaccacaaaaagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 28036950  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  28036951 gggacaaatatttttt 28036966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 1929366 - 1929481
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||| ||||||||| |||||||| ||||||||| || |||||||  |||||| ||||||||||||    
T  1929366 tttgttccactacaaactttaacatggggaccacaaaaaatatttataaggggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgt 1929465  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  1929466 gggacaaatatttttt 1929481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 32045983 - 32045868
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| | ||||||| || ||||||| ||||||| ||||||||||||    
T  32045983 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtattgt 32045884  T
Q  117 gtgacaaatatttttt 132  Q
    |  |||||||||||||    
T  32045883 ggaacaaatatttttt 32045868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 39151047 - 39151162
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||| ||||||||| || ||||||| || |||| ||||||||||||    
T  39151047 tttgttccactacaaactttaacatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgt 39151146  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  39151147 gggacaaatatttttt 39151162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 40562584 - 40562699
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    ||||||| |||||||||||||| ||||  |||||||| ||||||||||| |||||||||| |||||||||| ||| |||  |||||||||||||||||||    
T  40562584 tttgttctactacaaacttttacatggagaccacaaagagtatttataaggggtaaatttatcaaattctgcttaaaaatatgagaatgtcaagtattgt 40562683  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  40562684 gggacaaatatttttt 40562699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 46862706 - 46862591
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||| ||| || |||| ||||||||||||    
T  46862706 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtattgt 46862607  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  46862606 gggacaaatatttttt 46862591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 38321795 - 38321680
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| || ||||| | | ||||| || ||||||| ||||||| ||||||||||||    
T  38321795 tttgttccactacaaactttaacatggggaccacaaaaagtatttataagggttaaatcttttaaattttgcttagaaatctgagaaggtcaagtattgt 38321696  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  38321695 gggacaaatatttttt 38321680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 38817924 - 38817809
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| || |||||||  |||||| ||||| |||| |    
T  38817924 tttgtttcactacaaacttttacatggggaccacaaaaagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatattat 38817825  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  38817824 gggacaaatatttttt 38817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 50777147 - 50777032
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||| |||||||||||||||| |||||||| ||||||||| || |||||||  | |||| |||||||||| |    
T  50777147 tttgttccactacaaactttaacatggggaccccaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtattat 50777048  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  50777047 gggacaaatatttttt 50777032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 8229206 - 8229093
Alignment:
Q  24 cactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaa 123  Q
    ||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||| || ||| ||| || |||| || |||||||| |  ||||    
T  8229206 cactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtattgaggaacaa 8229107  T
Q  124 atattttttgtaaa 137  Q
    ||||||||| ||||    
T  8229106 atattttttataaa 8229093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 9129552 - 9129667
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||| ||||| ||||  |||||||||| ||||||||| |||||||||| |||||||||| ||| ||| ||||||| || || |||| |    
T  9129552 tttgttccactacaaaattttacatggagaccacaaaaaatatttataaggggtaaatttatcaaattctgcttaaaaatctgagaaggtaaaatattat 9129651  T
Q  117 gtgacaaatatttttt 132  Q
    | || |||||||||||    
T  9129652 gagataaatatttttt 9129667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 1207636 - 1207715
Alignment:
Q  52 aaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatatttttt 132  Q
    |||||||||||||| |||||||| |||||||||||| ||||||| ||||||| |||||||||| |  ||||||||||||||    
T  1207636 aaaagtatttataa-gggtaaatctgtcaaattctgcttagaaatctgagaaggtcaagtattataagacaaatatttttt 1207715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 17493677 - 17493561
Alignment:
Q  16 atttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattg 115  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||  ||||||||||    
T  17493677 atttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtattg 17493578  T
Q  116 tgtgacaaatatttttt 132  Q
    || ||||||||||||||    
T  17493577 tgggacaaatatttttt 17493561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 27820923 - 27820808
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||| ||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  27820923 tttgttccactacaaattttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 27820824  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  27820823 gggacaaatatttttt 27820808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 38070045 - 38070160
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| ||  |||||| ||||||| ||||||||||||    
T  38070045 tttgttccactacaaactttaacatggggaccacaaaaagtatttataatgggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgt 38070144  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  38070145 gggacaaatatttttt 38070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 17336121 - 17336235
Alignment:
Q  18 ttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtg 117  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| || |||| |||||||||| ||    
T  17336121 ttgttccactagaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatg 17336220  T
Q  118 tgacaaatatttttt 132  Q
     ||||||||||||||    
T  17336221 ggacaaatatttttt 17336235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 11254650 - 11254535
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||| |||| || ||||||||||||    
T  11254650 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgt 11254551  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||| | ||||||    
T  11254550 gggacaattttttttt 11254535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 12738516 - 12738631
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| | |||||||| ||||||||| ||||||||||||||||||||| ||||||| |||| || |||||||||| |    
T  12738516 tttgttccactacaaactttaacatggggatcacaaaaaatatttataaggggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtattat 12738615  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  12738616 gggacaaatatttttt 12738631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 39907058 - 39906946
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||  |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  39907058 tttgttccactacaaactttaacatgg--accacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 39906961  T
Q  117 gtgacaaatattttt 131  Q
    | |||||||||||||    
T  39906960 gggacaaatattttt 39906946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 13243696 - 13243811
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||||| || |  |||||||||||||||||||| |||| |||||||||||||||| |||||||  |||||| ||||| ||||||    
T  13243696 tttgttccactacaaacttttacattgagaccacaaaaagtatttataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatattgt 13243795  T
Q  117 gtgacaaatatttttt 132  Q
    | |||| |||||||||    
T  13243796 gagacatatatttttt 13243811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 9753920 - 9753800
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||||| || |  |||||||||| |||||||||  |||||||||||||||||||| |||||||  |||||| |||||||||| |    
T  9753920 tttgtttcactacaaacttttacattgagaccacaaaaaatatttataagaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtattat 9753821  T
Q  117 gtgacaaatattttttgtaaa 137  Q
    | |||||||||||||| ||||    
T  9753820 gggacaaatattttttttaaa 9753800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 18575178 - 18575063
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||  | ||||||||||||||| || ||||||| ||||||| ||| ||||||||    
T  18575178 tttgttccactacaaactttaacatggggaccacaaaaagtatttataagagataaatttgtcaaattttgcttagaaatctgagaaggtcgagtattgt 18575079  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||| | ||||||    
T  18575078 gggacaattttttttt 18575063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 48838210 - 48838095
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||| ||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  48838210 tttgttccactacacacttttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaagtcaagtattgt 48838111  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  48838110 gggacaaatatttttt 48838095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 6392421 - 6392306
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| || |||||||||    
T  6392421 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtattgt 6392322  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  6392321 gggacaaatatttttt 6392306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 29737555 - 29737440
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| || |||| ||||||||||||    
T  29737555 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgt 29737456  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  29737455 gggacaaatatttttt 29737440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 38276695 - 38276810
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| |||||||||||| |||||||  ||| || ||||||||||||    
T  38276695 tttgttccactacaaactttaatatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtattgt 38276794  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  38276795 gggacaaatatttttt 38276810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 40232265 - 40232380
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||  |||||| ||||||||||||    
T  40232265 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgt 40232364  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  40232365 gggacaaatatttttt 40232380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 4041097 - 4040982
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||||||| |||||||||||| ||||||||  |||||||| || ||||||| ||||||| ||||||||||||    
T  4041097 tttgttccactacaaactttaacatggggaccacaacaagtatttataaggggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtattgt 4040998  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  4040997 gggacaaatatttttt 4040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 27596236 - 27596350
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||| ||  |||||| ||||||| ||||||||||||    
T  27596236 tttgtttcactacaaactttaacatggga-ccacaaaaagtatttataaagggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgt 27596334  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  27596335 gggacaaatatttttt 27596350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 21442952 - 21443063
Alignment:
Q  21 ttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtga 120  Q
    ||||||| |||||||||| ||||  |||||||||||||||||||| || |||||||||||||||||  ||| ||| ||||||| ||||||||||||| ||    
T  21442952 ttccactgcaaacttttacatggagaccacaaaaagtatttataagggataaatttgtcaaattctacttaaaaatctgagaaggtcaagtattgtggga 21443051  T
Q  121 caaatatttttt 132  Q
    ||||||||||||    
T  21443052 caaatatttttt 21443063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 24300294 - 24300409
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||  ||| || ||||||||||||    
T  24300294 tttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgataaggtcaagtattgt 24300393  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  24300394 gggacaaatatttttt 24300409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 41427798 - 41427913
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| |||||||  |||| ||||||    
T  41427798 tttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgt 41427897  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  41427898 gggacaaatatttttt 41427913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 25943797 - 25943910
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||| |||  |||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  25943797 tttgttccactacaaactttaacatggggaccataaa--gtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 25943894  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  25943895 gggacaaatatttttt 25943910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 31689503 - 31689618
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||| ||||||| | ||| | |||||||||||||| ||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  31689503 tttgtttcactataaactttaacatgaggaccacaaaaagtatatataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 31689602  T
Q  117 gtgacaaatatttttt 132  Q
    | |||| |||||||||    
T  31689603 gggacagatatttttt 31689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 42897524 - 42897639
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  42897524 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 42897623  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  42897624 gggacaaatatttttt 42897639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 36982337 - 36982221
Alignment:
Q  16 atttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattg 115  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| ||  ||||||  |||||| |||||||||||    
T  36982337 atttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtattg 36982238  T
Q  116 tgtgacaaatatttttt 132  Q
    || ||||||||||||||    
T  36982237 tgggacaaatatttttt 36982221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 2970815 - 2970929
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | || |  |||||||||||||||||||  ||||||||||||||||||||| |||||||  |||||||||||||||||||    
T  2970815 tttgttccactacaaacttt-acattgagaccacaaaaagtatttatacggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtattgt 2970913  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  2970914 gggacaaatatttttt 2970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 14044207 - 14044091
Alignment:
Q  16 atttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattg 115  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  ||||||| ||||||||| || ||||||| ||||||| ||||| ||||     
T  14044207 atttgttccactacaaactttaacatggggaccacaaaaagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatatta 14044108  T
Q  116 tgtgacaaatatttttt 132  Q
    || ||||||||||||||    
T  14044107 tgggacaaatatttttt 14044091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 3172169 - 3172284
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||||| || |  ||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||| ||||||||||||    
T  3172169 tttgttccactacaaacttttacattgagaccacaaaaagtatttataaaaggtaaatttgtcaaattctgcttagaaatttgagaaagtcaagtattgt 3172268  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  3172269 gggacaaatatttttt 3172284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 40071599 - 40071714
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  40071599 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 40071698  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  40071699 gggacaaatatttttt 40071714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 37064903 - 37065018
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  37064903 tttgttccactacaaactttaacatgaggaccacaaaaagtatttataaggggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtattgt 37065002  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  37065003 gggacaaatatttttt 37065018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 54438307 - 54438422
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| |||||||  |||||||||||    
T  54438307 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgt 54438406  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  54438407 gggacaaatatttttt 54438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 46870757 - 46870637
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |  ||| ||| ||||| | ||||||||||||    
T  46870757 tttgttccactacaaacttttacatggggaccacaaaaagtatttataagggataaatttgtcaaattgtacttaaaaatctgagcaggtcaagtattgt 46870658  T
Q  117 gtgacaaatattttttgtaaa 137  Q
    | |||||||||||||| ||||    
T  46870657 gggacaaatattttttctaaa 46870637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 925286 - 925401
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||||    
T  925286 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgt 925385  T
Q  117 gtgacaaatatttttt 132  Q
      || |||||||||||    
T  925386 aggataaatatttttt 925401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 17493903 - 17493788
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||| ||||||| |||||||| ||||||||| || ||||||| |||||||  |||||||||||    
T  17493903 tttgttccactacaaactttaacatggggaccacaaaaagtttttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgt 17493804  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  17493803 gagacaaatatttttt 17493788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 32218087 - 32218202
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||| |||||||  ||||||||| |    
T  32218087 tttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttaaaaatctgagaaaatcaagtattat 32218186  T
Q  117 gtgacaaatatttttt 132  Q
      ||||||||||||||    
T  32218187 aggacaaatatttttt 32218202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 39788143 - 39788028
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||| |||| || ||||||||||||    
T  39788143 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgt 39788044  T
Q  117 gtgacaaatatttttt 132  Q
    |  |||||||||||||    
T  39788043 ggaacaaatatttttt 39788028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 21240476 - 21240361
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||  |||||||| |||||||||||  ||||||  ||||||| |||||||||| |    
T  21240476 tttgttccactacaaactttaacatggggaccacaaaaagtatttatatggggtaaatctgtcaaattctacttagaagtctgagaaggtcaagtattat 21240377  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  21240376 gggacaaatatttttt 21240361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 47199636 - 47199521
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||  |||||||| ||| ||||| ||  |||||| ||||||| ||||||||||||    
T  47199636 tttgttccactacaaactttaacatggggaccacaaaaagtatttatatggggtaaatctgttaaattttgcctagaaatctgagaaggtcaagtattgt 47199537  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  47199536 gggacaaatatttttt 47199521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 20789823 - 20789708
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| || ||||| ||||||||| |  ||||||| |||||||  ||||||||| |    
T  20789823 tttgttccactacaaactttaacatggggaccacaaaaagtatttataagggataaatctgtcaaattttacttagaaatctgagaagatcaagtattat 20789724  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  20789723 gggacaaatatttttt 20789708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 28910306 - 28910421
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| || || || |||    
T  28910306 tttgttccactagaaacttttacatggaaaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggttaaatactgt 28910405  T
Q  117 gtgacaaatatttttt 132  Q
       |||||||||||||    
T  28910406 agaacaaatatttttt 28910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 52101198 - 52101112
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaa 103  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||| |||||||    
T  52101198 tttgttccactacaaactttaacatgggaaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttataaatctgagaa 52101112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 51744657 - 51744749
Alignment:
Q  40 atgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatatttttt 132  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||  |||||| ||||||||||||| ||||||||||||||    
T  51744657 atggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatatttttt 51744749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 33800933 - 33801047
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||||  ||||||| ||||||||| |  ||||||| ||||||| |||||||||| |    
T  33800933 tttgttccactacaaactttaatatggggaccacaaaa-gtatttataagaggtaaatctgtcaaattttacttagaaatctgagaaggtcaagtattat 33801031  T
Q  117 gtgacaaatatttttt 132  Q
       |||||||||||||    
T  33801032 agaacaaatatttttt 33801047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 34408815 - 34408922
Alignment:
Q  25 actacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaa 124  Q
    |||||||||||| | ||| | |||||||||||||||||||| |||||||| ||||||||| |   |||||| ||||||| |||||||||| || ||||||    
T  34408815 actacaaactttaacatgtggaccacaaaaagtatttataaggggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtattatgggacaaa 34408914  T
Q  125 tatttttt 132  Q
    ||||||||    
T  34408915 tatttttt 34408922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 53509792 - 53509912
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||| ||| | ||||| | |||||||||||||||||| |  ||||| |||||||||||  ||||||| |||| || ||||| ||||||    
T  53509792 tttgttccactacaaattttaacatggggatcacaaaaagtatttataaggaataaatatgtcaaattctccttagaaatctgataaggtcaaatattgt 53509891  T
Q  117 gtgacaaatattttttgtaaa 137  Q
    |  ||||||||||||| ||||    
T  53509892 ggaacaaatattttttctaaa 53509912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 41555612 - 41555497
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||||| || |  |||||||||||||  ||||| ||||||| ||||||||||  | ||| |||  |||||| ||||| |||||     
T  41555612 tttgtttcactacaaacttttacatagagaccacaaaaagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgagaaggtcaattattgc 41555513  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||| ||||||    
T  41555512 gggacaaatttttttt 41555497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 16507 - 16392
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||  |||||| ||||||||||||    
T  16507 tttgtttcactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgt 16408  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  16407 gggacaaatatttttt 16392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 1128 - 1014
Alignment:
Q  18 ttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtg 117  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||| ||| ||| ||| |||||||  ||||||||||||    
T  1128 ttgttccactacaaacttttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaatcctgcttaaaaatctgagaagctcaagtattgtg 1029  T
Q  118 tgacaaatatttttt 132  Q
     ||||||||||||||    
T  1028 ggacaaatatttttt 1014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 10743 - 10858
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||| |||| || ||||||||||||    
T  10743 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgt 10842  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||| | ||||||    
T  10843 gggacaattttttttt 10858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 1241259 - 1241144
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||||||||  ||||||| ||||||||| || ||||||| |||||||  |||||||||||    
T  1241259 tttgttccactgcaaactttaatatggggaccacaaaaagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtattgt 1241160  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  1241159 gggacaaatatttttt 1241144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 1870684 - 1870569
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||||| ||||  | |||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  1870684 tttgttccactacaaacttttacatggagatcacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtattgt 1870585  T
Q  117 gtgacaaatatttttt 132  Q
       |||||||||||||    
T  1870584 tgaacaaatatttttt 1870569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 13042122 - 13042007
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | || || |||||||||||||||||||| |||||||| ||||||||| || ||| ||| ||||||| ||||||||||||    
T  13042122 tttgttccactacaaactttaacatagggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgt 13042023  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  13042022 gggacaaatatttttt 13042007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 28541737 - 28541852
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| ||  |||||| ||||||| ||||||||||||    
T  28541737 tttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgt 28541836  T
Q  117 gtgacaaatatttttt 132  Q
    | || |||||||||||    
T  28541837 gggataaatatttttt 28541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 7271232 - 7271343
Alignment:
Q  21 ttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtga 120  Q
    |||||||||||||||| | ||||| || ||||||||||||||||| |||||||| |||||||||||| ||||||| || |||| |||||||||| || ||    
T  7271232 ttccactacaaactttaacatggggacaacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatggga 7271331  T
Q  121 caaatatttttt 132  Q
    ||||||||||||    
T  7271332 caaatatttttt 7271343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 16435929 - 16435814
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||  |||||||| ||||||||| |  |||||||  |||||| ||||||||||||    
T  16435929 tttgttccactacaaactttaacatgagaaccacaaaaagtatttatatggggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtattgt 16435830  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  16435829 gggacaaatatttttt 16435814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 13210494 - 13210396
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattg 115  Q
    |||||||||||||||||||||| ||||  |||||||||| ||||||||| ||||||||||||||||||||| ||| |||  |||||| |||||||||||    
T  13210494 tttgttccactacaaacttttacatggagaccacaaaaaatatttataatgggtaaatttgtcaaattctgcttaaaaatttgagaaggtcaagtattg 13210396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 29182741 - 29182626
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| | || || ||||||||| ||||||||||  ||||||| ||||||||| ||  |||||| ||||||| ||||||||||||    
T  29182741 tttgttccactacaaactttaacatagggaccacaaaatgtatttataagaggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgt 29182642  T
Q  117 gtgacaaatatttttt 132  Q
      ||||||||||||||    
T  29182641 aggacaaatatttttt 29182626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 30736569 - 30736454
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||| ||||||||||| | ||||| |  ||||||||||||||||| |||||||| ||||||||| || ||||||| |||||||  |||| ||||||    
T  30736569 tttgttcctctacaaactttaacatggggattacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgt 30736470  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  30736469 gggacaaatatttttt 30736454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 31013645 - 31013760
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    ||||||| |||||||||||| |||||||  ||||||||| ||||||||| || |||||  ||||||||||| ||||||| |||||||  |||||||||||    
T  31013645 tttgttctactacaaactttaatatgggggccacaaaaaatatttataagggataaatccgtcaaattctgcttagaaatctgagaagatcaagtattgt 31013744  T
Q  117 gtgacaaatatttttt 132  Q
    |  |||||||||||||    
T  31013745 ggaacaaatatttttt 31013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 12350414 - 12350307
Alignment:
Q  25 actacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaa 124  Q
    |||||||||||| | ||| | |||||||||||||| ||||| |||||||| ||||||||| || |||||||  |||||| ||||| ||||||| ||||||    
T  12350414 actacaaactttaacatgaggaccacaaaaagtatatataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaa 12350315  T
Q  125 tatttttt 132  Q
    || |||||    
T  12350314 tacttttt 12350307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 31833747 - 31833830
Alignment:
Q  49 acaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgtgtgacaaatatttttt 132  Q
    ||||||||||||| ||| || ||||||||||||||| || ||| ||| ||||||| ||||||||| ||| ||||||||||||||    
T  31833747 acaaaaagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtatcgtgggacaaatatttttt 31833830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 10167 - 10282
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||| ||||||| | ||||| |||||||||||||||||||| || ||||| ||||||||| || |||||||  |||||| ||||||||||||    
T  10167 tttgttccactataaactttaacatggggaccacaaaaagtatttataagggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgt 10266  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  10267 gggacaaatatttttt 10282  T

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Target: scaffold0047 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 69903 - 69788
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    |||||||||||||||||||| ||| ||| | ||||||||||||||||||  ||||||| ||||||||| || |||||||  |||||| ||||||||||||    
T  69903 tttgttccactacaaactttaatacggggatcacaaaaagtatttataagcggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgt 69804  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  69803 gggacaaatatttttt 69788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 3964 - 3849
Alignment:
Q  17 tttgttccactacaaacttttatatgggaaccacaaaaagtatttataaagggtaaatttgtcaaattctgtttagaaaactgagaatgtcaagtattgt 116  Q
    ||||||||| |||||||||| | ||| | ||| ||||||||||||||||  ||||||| ||||||||| || ||||||| ||||||| |||||||||| |    
T  3964 tttgttccattacaaactttaacatgaggaccgcaaaaagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattat 3865  T
Q  117 gtgacaaatatttttt 132  Q
    | ||||||||||||||    
T  3864 gggacaaatatttttt 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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