View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19862_low_9 (Length: 268)
Name: NF19862_low_9
Description: NF19862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19862_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 2369600 - 2369352
Alignment:
| Q |
5 |
atgtcgaagaatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac |
104 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369600 |
atgttgaataatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac |
2369501 |
T |
|
| Q |
105 |
aagctgttgcaaattaattgaattcactgctcataatacaaattaatcacaattatgatt-aaaagttgatacaagaaaccaagatgagagatgagattg |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369500 |
aagctgttgcaaattaattgaattcaatgctcataatacaaattaatcacaattatgattaaaaagttgatacaagaaaccaagatgagagatgagattg |
2369401 |
T |
|
| Q |
204 |
tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369400 |
tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaat |
2369352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 36698053 - 36697966
Alignment:
| Q |
165 |
aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaat |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36698053 |
aaaaattgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaat |
36697966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 20104701 - 20104637
Alignment:
| Q |
188 |
atgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaat |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| | |||||||| ||||||||| |
|
|
| T |
20104701 |
atgagagatgtcattgtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaat |
20104637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University