View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19863_high_10 (Length: 403)
Name: NF19863_high_10
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 24728694 - 24728862
Alignment:
| Q |
14 |
aggcctcaatcgttgttgtgttgtattttccgaaaaatcaaaaactgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccctattaa |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24728694 |
aggcctcaatcgttgttttgttgtattttccgaaaaatcaaaaactgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccctattaa |
24728793 |
T |
|
| Q |
114 |
cctttattcccataagtctgtctttcatgtaaagctttttccacttttatgtgtagtaattagtcagag |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24728794 |
cctttattcccataagtctgtctttcatgtaaagctttttccacttttacgtgtagtaattagtcagag |
24728862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 185 - 387
Target Start/End: Original strand, 24689311 - 24689513
Alignment:
| Q |
185 |
aattgcaggtatatataagaatattccatttttcatatctctacctatcccctccctcaaacaggaaccagtgttctcaagcttttggaaagctagtctt |
284 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24689311 |
aattggagctatatataagaatattccattttccattttgctacctatcccctcccccatacaggaaccagtgttctcaagcttttggaaagctagcctt |
24689410 |
T |
|
| Q |
285 |
ttagacttttcatgtataagattgattaagcatgaagaattccttggaatccatgtattataatttataactttattgtcctaaactgaactctgcttag |
384 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24689411 |
ttagacttttcatgtataaggttaattaagtatgaagaattccttggaatccatgtattataatttataattttattgtcctaaactgaactttgcttag |
24689510 |
T |
|
| Q |
385 |
ttt |
387 |
Q |
| |
|
||| |
|
|
| T |
24689511 |
ttt |
24689513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 185 - 387
Target Start/End: Original strand, 24728896 - 24729100
Alignment:
| Q |
185 |
aattgcaggtatatataagaatattccatttttcatatct--ctacctatcccctccctcaaacaggaaccagtgttctcaagcttttggaaagctagtc |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || | | ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
24728896 |
aattgcatctatatataagaatattccattttttatgttttgctacctaccccctcccccaaacaggaaccaaagttctcaagcttttggaaagctagcc |
24728995 |
T |
|
| Q |
283 |
ttttagacttttcatgtataagattgattaagcatgaagaattccttggaatccatgtattataatttataactttattgtcctaaactgaactctgctt |
382 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24728996 |
ttttagacttttcatgtataatctcaattaagtatgtaaaattccttggaatccatgtattataatttataactttattgtcctaaactgaactctgctt |
24729095 |
T |
|
| Q |
383 |
agttt |
387 |
Q |
| |
|
||||| |
|
|
| T |
24729096 |
agttt |
24729100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University