View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_high_14 (Length: 370)

Name: NF19863_high_14
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_high_14
NF19863_high_14
[»] chr1 (18 HSPs)
chr1 (184-353)||(23915104-23915269)
chr1 (191-353)||(23922753-23922928)
chr1 (288-353)||(25803205-25803270)
chr1 (307-353)||(5253011-5253057)
chr1 (18-76)||(29523684-29523742)
chr1 (288-353)||(24436241-24436306)
chr1 (295-353)||(23989853-23989911)
chr1 (18-76)||(30878574-30878632)
chr1 (18-68)||(31468122-31468172)
chr1 (9-75)||(44651056-44651121)
chr1 (18-68)||(45239127-45239177)
chr1 (18-74)||(2478358-2478414)
chr1 (9-88)||(8464067-8464147)
chr1 (18-74)||(48388138-48388194)
chr1 (22-68)||(27630494-27630540)
chr1 (22-68)||(37420378-37420424)
chr1 (18-63)||(8468318-8468363)
chr1 (9-74)||(44334272-44334337)
[»] chr3 (31 HSPs)
chr3 (9-98)||(42601724-42601813)
chr3 (18-74)||(36178734-36178790)
chr3 (9-74)||(25832745-25832809)
chr3 (9-74)||(46572946-46573011)
chr3 (18-74)||(50415860-50415916)
chr3 (9-64)||(7521158-7521213)
chr3 (22-76)||(11908004-11908058)
chr3 (18-76)||(12974653-12974711)
chr3 (18-68)||(17466508-17466558)
chr3 (18-68)||(25790805-25790855)
chr3 (18-68)||(47144166-47144216)
chr3 (18-74)||(6048726-6048782)
chr3 (18-74)||(29701669-29701725)
chr3 (18-74)||(32120468-32120524)
chr3 (18-74)||(44084296-44084352)
chr3 (18-74)||(51999267-51999323)
chr3 (16-75)||(49028571-49028630)
chr3 (22-68)||(5845174-5845220)
chr3 (18-76)||(26165584-26165642)
chr3 (18-64)||(30418459-30418505)
chr3 (18-68)||(33748678-33748728)
chr3 (18-63)||(7008053-7008098)
chr3 (18-63)||(27847407-27847452)
chr3 (18-63)||(41183272-41183317)
chr3 (9-74)||(41890522-41890586)
chr3 (36-97)||(50033631-50033692)
chr3 (18-74)||(4045967-4046023)
chr3 (18-74)||(10426461-10426517)
chr3 (18-74)||(20139347-20139403)
chr3 (18-74)||(42560888-42560944)
chr3 (9-69)||(42601526-42601585)
[»] chr7 (13 HSPs)
chr7 (9-71)||(25218829-25218891)
chr7 (22-77)||(38970014-38970069)
chr7 (4-74)||(22737611-22737681)
chr7 (9-74)||(22191207-22191271)
chr7 (9-98)||(24793453-24793542)
chr7 (18-68)||(5813090-5813140)
chr7 (18-64)||(39769725-39769771)
chr7 (9-68)||(21654839-21654897)
chr7 (18-64)||(36518511-36518557)
chr7 (22-75)||(26812098-26812151)
chr7 (18-63)||(30720117-30720162)
chr7 (18-75)||(32130301-32130358)
chr7 (21-74)||(37951733-37951786)
[»] chr5 (18 HSPs)
chr5 (9-74)||(25032338-25032403)
chr5 (19-76)||(4219472-4219529)
chr5 (9-74)||(8176324-8176389)
chr5 (18-76)||(23089501-23089559)
chr5 (4-74)||(41263347-41263417)
chr5 (9-101)||(25652768-25652863)
chr5 (18-66)||(31013874-31013922)
chr5 (18-74)||(42317873-42317929)
chr5 (4-51)||(8681304-8681351)
chr5 (20-75)||(29619046-29619101)
chr5 (4-74)||(14278814-14278884)
chr5 (18-64)||(25670936-25670982)
chr5 (18-64)||(32976606-32976652)
chr5 (18-64)||(40888889-40888935)
chr5 (18-74)||(13479854-13479910)
chr5 (18-74)||(19241301-19241357)
chr5 (18-74)||(27942476-27942532)
chr5 (297-349)||(35079793-35079845)
[»] chr6 (10 HSPs)
chr6 (2-74)||(22627821-22627893)
chr6 (18-68)||(631509-631559)
chr6 (18-74)||(8660544-8660600)
chr6 (18-74)||(8669875-8669931)
chr6 (9-68)||(29428539-29428598)
chr6 (18-68)||(17961294-17961344)
chr6 (22-68)||(34328272-34328318)
chr6 (18-63)||(10883868-10883913)
chr6 (18-63)||(24348429-24348474)
chr6 (9-69)||(6380510-6380569)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-100)||(123975-124053)
[»] chr2 (19 HSPs)
chr2 (9-71)||(37245491-37245553)
chr2 (18-74)||(14152098-14152154)
chr2 (9-75)||(927913-927979)
chr2 (18-68)||(8852050-8852100)
chr2 (18-68)||(12855012-12855062)
chr2 (18-68)||(24997073-24997123)
chr2 (18-68)||(30822614-30822664)
chr2 (18-98)||(5146742-5146822)
chr2 (18-74)||(7588535-7588591)
chr2 (18-74)||(22351645-22351701)
chr2 (18-74)||(43021728-43021784)
chr2 (18-64)||(1308728-1308774)
chr2 (18-68)||(4296802-4296852)
chr2 (18-76)||(17485802-17485860)
chr2 (18-63)||(9117810-9117855)
chr2 (18-75)||(39490129-39490186)
chr2 (34-74)||(13151531-13151571)
chr2 (22-66)||(39434046-39434090)
chr2 (18-74)||(44279979-44280035)
[»] chr8 (17 HSPs)
chr8 (9-74)||(8610002-8610067)
chr8 (9-74)||(18029520-18029585)
chr8 (9-74)||(36912402-36912467)
chr8 (9-75)||(34955687-34955752)
chr8 (9-75)||(41477167-41477233)
chr8 (9-74)||(4625515-4625580)
chr8 (9-74)||(26632174-26632239)
chr8 (9-74)||(38584915-38584980)
chr8 (18-63)||(43525119-43525164)
chr8 (18-74)||(35931847-35931903)
chr8 (18-64)||(1958210-1958256)
chr8 (18-68)||(43618379-43618429)
chr8 (18-75)||(40283459-40283516)
chr8 (18-75)||(43524421-43524478)
chr8 (18-63)||(45101055-45101100)
chr8 (9-69)||(17741702-17741762)
chr8 (18-66)||(35099428-35099476)
[»] chr4 (21 HSPs)
chr4 (25-74)||(35394902-35394951)
chr4 (20-98)||(55947-56025)
chr4 (18-76)||(45081442-45081500)
chr4 (18-68)||(46917541-46917591)
chr4 (18-83)||(2215312-2215377)
chr4 (296-349)||(13435800-13435853)
chr4 (18-74)||(3533337-3533393)
chr4 (18-74)||(3618483-3618539)
chr4 (18-74)||(6290586-6290642)
chr4 (18-74)||(23540456-23540512)
chr4 (18-74)||(40721021-40721077)
chr4 (16-63)||(33604654-33604701)
chr4 (9-68)||(53184117-53184175)
chr4 (18-64)||(4981505-4981551)
chr4 (18-76)||(13094420-13094478)
chr4 (18-76)||(48403930-48403988)
chr4 (18-63)||(38173552-38173597)
chr4 (18-74)||(8991769-8991825)
chr4 (18-74)||(16020833-16020889)
chr4 (18-74)||(34199299-34199355)
chr4 (4-64)||(39049099-39049159)
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-74)||(30559-30624)
[»] scaffold0362 (1 HSPs)
scaffold0362 (18-63)||(5353-5398)
[»] scaffold0054 (1 HSPs)
scaffold0054 (18-63)||(57773-57818)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 184 - 353
Target Start/End: Complemental strand, 23915269 - 23915104
Alignment:
Q  184 ggtattgcattataatgcctataaattaagaaccctaagtaacgtttattctccattctcctcaacaacaaactaagtctattgtcaaaagagaaaatgg 283  Q
    |||| |||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915269 ggtactgcattataatgcctataaattaagaaccctaa----cgtctattctccattctcctcaacaacaaactaagtctattgtcaaaagagaaaatgg 23915174  T
Q  284 catattcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  23915173 catcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaac 23915104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 191 - 353
Target Start/End: Complemental strand, 23922928 - 23922753
Alignment:
Q  191 cattataatgcctataaattaagaaccctaagtaacgtttattctccattctcctcaacaacaaactaagtctattgtc-------------aaaagaga 277  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||             ||||||||    
T  23922928 cattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctcaacaacaaaataagtctattgtccattataattaacaaaagaga 23922829  T
Q  278 aaatggcatattcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23922828 aaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 23922753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 25803270 - 25803205
Alignment:
Q  288 ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    |||||| ||||||||  |||||||||||||||||||||| ||| |||||||||| |||||||||||    
T  25803270 ttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaac 25803205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 5253011 - 5253057
Alignment:
Q  307 ttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  5253011 ttgctcaccatttcaatgatctctatttctcatgccatttcaccaac 5253057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 29523742 - 29523684
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| |||||||||||    
T  29523742 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtgttgaaaa 29523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 24436306 - 24436241
Alignment:
Q  288 ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    |||||| ||| ||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  24436306 ttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaac 24436241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 23989853 - 23989911
Alignment:
Q  295 tatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaac 353  Q
    ||||||||| | || |||||||| ||||||| |||| ||||||||||||||||||||||    
T  23989853 tatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaac 23989911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 30878574 - 30878632
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||||||||||||| |||||||||||  | |||||||||    
T  30878574 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgagggttgttgaaaa 30878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 31468172 - 31468122
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  31468172 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 31468122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 44651121 - 44651056
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||| | |||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||    
T  44651121 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaaa 44651056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 45239177 - 45239127
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  45239177 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 45239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 2478358 - 2478414
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  2478358 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 2478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 8464147 - 8464067
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg-ttgaaaaagaaaatcattg 88  Q
    |||||| | |||||||||||| || |||||||  ||||||||| |||| |||||||||||| |||||| | ||||||||||    
T  8464147 gaataagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtgtttgaaagaaaaaatcattg 8464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 48388138 - 48388194
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  48388138 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 48388194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 27630494 - 27630540
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  27630494 aaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 27630540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 37420378 - 37420424
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  37420378 aaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 37420424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8468363 - 8468318
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  8468363 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 8468318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 44334337 - 44334272
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||  ||||||||| |||| ||||||||||| |||||    
T  44334337 gaataagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtattgaa 44334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 42601813 - 42601724
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 98  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||   |||| ||||||| |||||||    
T  42601813 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgttgaaaggaaaaaccattggagatggtct 42601724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 36178734 - 36178790
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||    
T  36178734 agagaaaatgatttgaagtgttgggaattgaaaaagtgggtgttgaagggtgttgaa 36178790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 25832745 - 25832809
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||    
T  25832745 gaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaa 25832809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 46572946 - 46573011
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  46572946 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 46573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 50415860 - 50415916
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||||||||||||| |||||||||||| | |||||||    
T  50415860 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaggttgttgaa 50415916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 7521158 - 7521213
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||| | |||||||||||| ||||||||||||||||||||| | ||||||||||    
T  7521158 gaataagagagagaaaatgatctgaagtgttggaaattgaaaaagcgggtgttgaa 7521213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 11908058 - 11908004
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||| |||||||    
T  11908058 aaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaagggtattgaaaa 11908004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12974711 - 12974653
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| ||| |||||||    
T  12974711 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 12974653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 17466558 - 17466508
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  17466558 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 17466508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 25790805 - 25790855
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  25790805 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 25790855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 47144216 - 47144166
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  47144216 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 47144166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 6048726 - 6048782
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  6048726 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 6048782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 29701725 - 29701669
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  29701725 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 29701669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 32120468 - 32120524
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  32120468 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 32120524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44084352 - 44084296
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  44084352 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 44084296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 51999267 - 51999323
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  51999267 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 51999323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 49028571 - 49028630
Alignment:
Q  16 atagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    ||||||||||||||||| |||||||| |||| |||| ||| |||||||| ||| ||||||    
T  49028571 atagagaaaatgatatggagtgttgggaattaaaaaagtgtgtgttgaagggtattgaaa 49028630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 5845174 - 5845220
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  5845174 aaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 5845220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26165584 - 26165642
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| |||||||    
T  26165584 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaaa 26165642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 30418459 - 30418505
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  30418459 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 30418505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 33748728 - 33748678
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || ||||||||||||||||||  | |||||||||||||    
T  33748728 agagaaaatgatgtggagtgttggaaattgaaaaaataggtgttgaatggt 33748678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 7008098 - 7008053
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||    
T  7008098 agagaaaatgatgtagagtgttggaaattgaaaaagtgggtgttga 7008053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27847452 - 27847407
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||||||||||||| |||| ||||||    
T  27847452 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 27847407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 41183317 - 41183272
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  41183317 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 41183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 41890586 - 41890522
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||| ||||||||| || | |||||||||||||||||    
T  41890586 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-gatgttgaatggtgttgaa 41890522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 50033692 - 50033631
Alignment:
Q  36 tgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtc 97  Q
    ||||||||||| |||| |||| |||||||||||||| |||  ||||| ||||||| ||||||    
T  50033692 tgttggaaattaaaaaagtggatgttgaatggtgttaaaagggaaaaccattggagatggtc 50033631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 4046023 - 4045967
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||    
T  4046023 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaa 4045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10426461 - 10426517
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| |||||||||  ||||||||||| | |||||||    
T  10426461 agagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaaggttgttgaa 10426517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 20139403 - 20139347
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| ||||||||||  ||||||||| |||||| |||| || |||||||    
T  20139403 agagaaaatgatgtgaagtgttgagaattgaaaaagtgggtattgagtgttgttgaa 20139347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 42560944 - 42560888
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || | |||||| ||||||||| |||||||||||| | |||||||    
T  42560944 agagaaaatgatgtggaatgttgggaattgaaaaagtgggtgttgaaggttgttgaa 42560888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 42601526 - 42601585
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 69  Q
    |||||| | |||||||||||| || |||||||| ||||||||| || ||||||||||||||    
T  42601526 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtg 42601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 25218829 - 25218891
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgtt 71  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  25218829 gaataagagagagaaaatgatatgaagtgttggaaattgaaaaagtggatgttaaatggtgtt 25218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 38970069 - 38970014
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaa 77  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||||||||||||    
T  38970069 aaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaaggtgttgaaaaa 38970014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 22737611 - 22737681
Alignment:
Q  4 atgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||| |||||| | |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  22737611 atgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgctgttgaa 22737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 22191271 - 22191207
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||||||||||||| || |||||||||||||||||||    
T  22191271 gaataagagagagaaaatgatgtggagtgttggaaattgaaaaagt-ggtgttgaatggtgttgaa 22191207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 24793542 - 24793453
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 98  Q
    |||||| | |||||||||||| || |||||||| | ||||||| | |||||||||||||||||||||   |||| ||||| |||||||||    
T  24793542 gaataagaaagagaaaatgatttggagtgttgggacttgaaaaagggggtgttgaatggtgttgaaaggaaaaaccattgaacatggtct 24793453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 5813140 - 5813090
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  5813140 agagaaaatgatgtgcagtgttgggaattgaaaaagtgggtgttgaatggt 5813090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39769771 - 39769725
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||||||||||||| ||||||||||||    
T  39769771 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaa 39769725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 21654897 - 21654839
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||| | |||||||||||| || |||||||||||||||||| || |||||||||||||    
T  21654897 gaataagagagagaaaatgatgtggagtgttggaaattgaaaaagt-ggtgttgaatggt 21654839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 36518557 - 36518511
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  36518557 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 36518511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 26812151 - 26812098
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    ||||||||||| |||||||| |||||||||  ||||||||||| ||| ||||||    
T  26812151 aaaatgatatggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaa 26812098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 30720162 - 30720117
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||||||||||||| || ||||||||    
T  30720162 agagaaaatgatgtggagtgttggaaattgaaaaagtaggtgttga 30720117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32130301 - 32130358
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||||||||| || |||||||| |||| |||| |||||||||| ||||| ||||||    
T  32130301 agagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgcatggtattgaaa 32130358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 37951786 - 37951733
Alignment:
Q  21 gaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| |||||||| ||||||||| || ||||||||| | |||||||    
T  37951786 gaaaatgatatggagtgttgggaattgaaaaagtaggtgttgaaggttgttgaa 37951733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 25032403 - 25032338
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || ||||||||||||||||||||||||||||||| ||| |||||    
T  25032403 gaataagagagagaaaatgatgtggagtgttggaaattgaaaaggtgggtgttgaacggtattgaa 25032338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4219472 - 4219529
Alignment:
Q  19 gagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| |||||||    
T  4219472 gagaaaatgatgtgaagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 4219529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8176324 - 8176389
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  8176324 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgatgttgaa 8176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 23089559 - 23089501
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| ||||||||||| |||| |||| |||||||||||| ||| |||||||    
T  23089559 agagaaaatgatgtgaagtgttgggaattaaaaaagtgggtgttgaagggtattgaaaa 23089501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 41263417 - 41263347
Alignment:
Q  4 atgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||| |||||| | |||||||||||| || || ||||| ||||||||| |||| |||||||||||||||||    
T  41263417 atgttgaataagagagagaaaatgatgtggagcgttgggaattgaaaaagtggatgttgaatggtgttgaa 41263347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 25652863 - 25652768
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtg---ttgaatggtgttgaaaaagaaaatcattggacatggtctaac 101  Q
    |||||| | |||||||||||| ||||||||||| ||||||||| |||| ||   ||||||| |||||||| | |||| ||||| | ||||||||||    
T  25652863 gaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagtggatgtaattgaatgatgttgaaagaaaaaaccattgtagatggtctaac 25652768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31013874 - 31013922
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 66  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||    
T  31013874 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatg 31013922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 42317929 - 42317873
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    ||||||||||||||| |||||||||||||||||| |||  ||||||| | |||||||    
T  42317929 agagaaaatgatatggagtgttggaaattgaaaaagtgaatgttgaaggttgttgaa 42317873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 8681304 - 8681351
Alignment:
Q  4 atgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaa 51  Q
    |||| |||||| | ||||||||||||||| ||||||||||||||||||    
T  8681304 atgttgaataagaaagagaaaatgatatggagtgttggaaattgaaaa 8681351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 29619046 - 29619101
Alignment:
Q  20 agaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||||||| || |||||||| ||||||||| |||||||||||| ||| ||||||    
T  29619046 agaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaa 29619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 14278884 - 14278814
Alignment:
Q  4 atgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||| |||||| | |||||||||||| || |||||||| |||||||||  |||||||||| || |||||||    
T  14278884 atgttgaataagagagagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgagtgttgttgaa 14278814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 25670936 - 25670982
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  25670936 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 25670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 32976606 - 32976652
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  32976606 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 32976652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 40888935 - 40888889
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  40888935 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 40888889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 13479854 - 13479910
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| |||| |||| |||||||||||| ||| |||||    
T  13479854 agagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaagggtattgaa 13479910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19241357 - 19241301
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||  ||||||||| |||||||||||| | |||||||    
T  19241357 agagaaaatgatgtggagtgttgagaattgaaaaagtgggtgttgaaggttgttgaa 19241301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 27942532 - 27942476
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || ||||||||  |||||||| |||||||||||| | |||||||    
T  27942532 agagaaaatgatgtggagtgttggggattgaaaaagtgggtgttgaaggttgttgaa 27942476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 35079845 - 35079793
Alignment:
Q  297 tttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcac 349  Q
    ||||||| ||||||||   ||||||||||||||| |||| |||||||||||||    
T  35079845 tttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcac 35079793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 22627893 - 22627821
Alignment:
Q  2 ggatgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| |||||| | |||||||||||| || |||||||||||||||||| ||||||||||| || |||||||    
T  22627893 ggatgttgaataaaagagagaaaatgatgtggagtgttggaaattgaaaacgtgggtgttgagtgttgttgaa 22627821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 631559 - 631509
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  631559 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 631509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8660600 - 8660544
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  8660600 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 8660544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8669931 - 8669875
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    ||||||||| || ||||||||||||||||||||| |||| ||||||| | |||||||    
T  8669931 agagaaaataatgtgaagtgttggaaattgaaaaagtggatgttgaaggttgttgaa 8669875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 29428539 - 29428598
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||| |||||||||||    
T  29428539 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaatggt 29428598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17961294 - 17961344
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    ||||||||| || || |||||||| ||||||||| ||||||||||||||||    
T  17961294 agagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 17961344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 34328318 - 34328272
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  34328318 aaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 34328272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 10883913 - 10883868
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||||||||||||| |||| ||||||    
T  10883913 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 10883868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24348474 - 24348429
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  24348474 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 24348429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 6380510 - 6380569
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 69  Q
    |||||| | |||||||||||| || |||||||| ||||||||| || ||||||||||||||    
T  6380510 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtg 6380569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 124053 - 123975
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtctaa 100  Q
    |||||||| || |||||||||||||||||| |||| |||||||||||||||||| | |||| ||||  | |||||||||    
T  124053 aaaatgatgtggagtgttggaaattgaaaaagtggatgttgaatggtgttgaaagaaaaaaccattatagatggtctaa 123975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 37245553 - 37245491
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgtt 71  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||||||||||||||||||    
T  37245553 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgtt 37245491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 14152098 - 14152154
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  14152098 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 14152154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 927913 - 927979
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||| | |||||||||||| || |||||||| |||| |||| ||||||||||||| |||||||||    
T  927913 gaataagagagagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaatagtgttgaaa 927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 8852100 - 8852050
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  8852100 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 8852050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 12855062 - 12855012
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  12855062 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 12855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 24997123 - 24997073
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  24997123 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 24997073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 30822614 - 30822664
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  30822614 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 30822664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 5146742 - 5146822
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 98  Q
    |||||||||||| || ||||||||||||| ||||  ||||||||||| ||| |||||| | |||| ||||||  |||||||    
T  5146742 agagaaaatgatgtggagtgttggaaattaaaaaaatgggtgttgaagggtattgaaagaaaaaaccattggggatggtct 5146822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 7588535 - 7588591
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  7588535 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 7588591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 22351645 - 22351701
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  22351645 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 22351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 43021784 - 43021728
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  43021784 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 43021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1308728 - 1308774
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||||||||||||| |||| |||||||    
T  1308728 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaa 1308774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4296802 - 4296852
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    ||||||||| || || |||||||| ||||||||| ||||||||||||||||    
T  4296802 agagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 4296852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 17485860 - 17485802
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| |||||||    
T  17485860 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaaa 17485802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9117855 - 9117810
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    ||||||||||| ||| ||||||| |||||||||| |||||||||||    
T  9117855 agagaaaatgaaatggagtgttgaaaattgaaaaagtgggtgttga 9117810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 39490186 - 39490129
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    ||||| |||||| || |||||||| ||||||||| |||||||||||| ||| ||||||    
T  39490186 agagagaatgatttggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaa 39490129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 13151531 - 13151571
Alignment:
Q  34 agtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||| ||||||||| |||||||||||||| |||||||    
T  13151531 agtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 13151571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 39434046 - 39434090
Alignment:
Q  22 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 66  Q
    |||||||| || | |||||||||||||||| ||||||||||||||    
T  39434046 aaaatgatgtggaatgttggaaattgaaaaagtgggtgttgaatg 39434090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44280035 - 44279979
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || ||||||| |||||||||| ||||||||| || | |||||||    
T  44280035 agagaaaatgatgtggagtgttgaaaattgaaaaagtgggtgttaaaggttgttgaa 44279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8610002 - 8610067
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | ||||||||||||||| |||||||| ||||||||| |||  |||||||||||||||||    
T  8610002 gaataaaagagagaaaatgatatggagtgttgggaattgaaaaagtgaatgttgaatggtgttgaa 8610067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 18029520 - 18029585
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| || |||||||| ||||||||| |||||||| |||||||||||||    
T  18029520 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgtcgaatggtgttgaa 18029585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 36912467 - 36912402
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||| |  |||||||| ||||||||| ||||||||||||||||||||||    
T  36912467 gaataagagagagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 36912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 34955687 - 34955752
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||| | |||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||    
T  34955687 gaataagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaaa 34955752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 41477233 - 41477167
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||| | |||||||||||  || |||||||| ||||||||| |||| ||||||||||||||||||    
T  41477233 gaataagagagagaaaatgacgtggagtgttgggaattgaaaaagtggatgttgaatggtgttgaaa 41477167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 4625515 - 4625580
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | ||||||||| || || |||||||| ||||||||| ||| ||||||||||||||||||    
T  4625515 gaataagagagagaaaataatttggagtgttgggaattgaaaaagtgagtgttgaatggtgttgaa 4625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 26632174 - 26632239
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||  ||  ||||||| ||||||||| ||||||||||||||||||||||    
T  26632174 gaataagagagagaaaatgacgtggcgtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 26632239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 38584915 - 38584980
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | |||||||||||  || |||||||| ||||||||| ||| ||||||||||||||||||    
T  38584915 gaataagagagagaaaatgacgtggagtgttgggaattgaaaaagtgtgtgttgaatggtgttgaa 38584980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 43525119 - 43525164
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||||||||||||| |||||||||||    
T  43525119 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttga 43525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 35931903 - 35931847
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||||||||||||| |||| ||||||| | |||||||    
T  35931903 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaaggttgttgaa 35931847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1958210 - 1958256
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  1958210 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 1958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 43618379 - 43618429
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| |||||| || ||||||||||||||||    
T  43618379 agagaaaatgatgtggagtgttgggaattgataaagtgggtgttgaatggt 43618429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 40283516 - 40283459
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| ||||||    
T  40283516 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaaggtattgaaa 40283459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 43524421 - 43524478
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 75  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| ||||||    
T  43524421 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaa 43524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 45101055 - 45101100
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  45101055 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 45101100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 17741762 - 17741702
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 69  Q
    |||||| | |||||||||||| || ||| |||| ||||||||| |||| ||||||||||||    
T  17741762 gaataagagagagaaaatgatgtggagtcttgggaattgaaaaagtggatgttgaatggtg 17741702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 35099476 - 35099428
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 66  Q
    |||||||||||| |  |||||||| ||||||||| ||||||||||||||    
T  35099476 agagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatg 35099428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 35394951 - 35394902
Alignment:
Q  25 atgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  35394951 atgatgtggagtgttggaaattgaaaaggtgtgtgttgaatggtgttgaa 35394902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 55947 - 56025
Alignment:
Q  20 agaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 98  Q
    ||||||||||  | |||||||||||||||||| ||| ||||| ||||||||||||  | |||| ||||| |||||||||    
T  55947 agaaaatgatgcggagtgttggaaattgaaaaagtgagtgttcaatggtgttgaatgaaaaaaccattgtacatggtct 56025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45081442 - 45081500
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| ||| |||||||    
T  45081442 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 45081500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 46917541 - 46917591
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  46917541 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 46917591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 2215312 - 2215377
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaat 83  Q
    ||||||||| || || |||||||| ||||||||| |||||||||||||||| || ||||| |||||    
T  2215312 agagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggtattaaaaaaaaaaat 2215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 13435800 - 13435853
Alignment:
Q  296 atttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcac 349  Q
    |||||||| | ||||||||||| |||||||||||| ||||||| ||||||||||    
T  13435800 atttatccttattgctcaccatatcaatgatctttatttctcacgccatttcac 13435853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3533337 - 3533393
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  3533337 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 3533393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3618483 - 3618539
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  3618483 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 3618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6290642 - 6290586
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  6290642 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 6290586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 23540456 - 23540512
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||| | |||||||    
T  23540456 agagaaaatgatgttgagtgttggaaattgaaaaagtgggtgttgaaggttgttgaa 23540512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 40721077 - 40721021
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||||  |||||||    
T  40721077 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatattgttgaa 40721021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 33604701 - 33604654
Alignment:
Q  16 atagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||||| || |||||||| ||||||||| |||||||||||    
T  33604701 atagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 33604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 53184117 - 53184175
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 68  Q
    |||||| | |||||||||||| ||||||||||| ||||||||| || |||||||||||||    
T  53184117 gaataagagagagaaaatgatgtgaagtgttgggaattgaaaaagt-ggtgttgaatggt 53184175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 4981551 - 4981505
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  4981551 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 4981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 13094420 - 13094478
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||| |||||||||  ||||||||||| ||| |||||||    
T  13094420 agagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaaa 13094478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 48403930 - 48403988
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 76  Q
    |||||||||||| || |||||||||||||||||| |||  ||||||| ||| |||||||    
T  48403930 agagaaaatgatgtggagtgttggaaattgaaaaagtgaatgttgaagggtattgaaaa 48403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 38173597 - 38173552
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  38173597 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 38173552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8991825 - 8991769
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| |||| |||| |||||||||||| | |||||||    
T  8991825 agagaaaatgatgtggagtgttgggaattcaaaaagtgggtgttgaaggttgttgaa 8991769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 16020889 - 16020833
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    ||||||||| || || |||||||| ||||||||| |||||||||||| | |||||||    
T  16020889 agagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 16020833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 34199299 - 34199355
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||    
T  34199299 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaa 34199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 39049099 - 39049159
Alignment:
Q  4 atgtcgaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 64  Q
    |||| |||||| | |||||||||||| || ||||||||||||| |||| |||| |||||||    
T  39049099 atgttgaataagaaagagaaaatgatgtggagtgttggaaattaaaaaagtggatgttgaa 39049159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 30559 - 30624
Alignment:
Q  9 gaataatatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 74  Q
    |||||| | ||||||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||    
T  30559 gaataagagagagaaaattatatggagtgttgagaattgaaaaagtggatgttgaatggtgttgaa 30624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5353 - 5398
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  5353 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 57773 - 57818
Alignment:
Q  18 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 63  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  57773 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 57818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University