View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_17 (Length: 358)
Name: NF19863_high_17
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 3234665 - 3234342
Alignment:
| Q |
17 |
atatacttatattggtgagttaaataatatttgtagttaatatagtatagaaatttcatatccgtggaaaccaaattcgtgaagaaaaaagtaccaaaat |
116 |
Q |
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| T |
3234665 |
atatacttatattggtgagttaaataatatttgtagttaatatagtatagaaatttcatatccgtggaaaccaaattcgtgaagaaaaaagtaccaaaat |
3234566 |
T |
|
| Q |
117 |
cgcgaatttaagaaaatagagagaccaatttttagtgcgaaaatgctatttctagcaacaacaaaaaactacatctcgtgtggttaaaaatttaatccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3234565 |
cgcgaatttaagaaaatagagagaccaatttttagtgcgaaaatgctatttctagcaacaacaaaaaactacatctcgtgtggttaaaaatttaatccac |
3234466 |
T |
|
| Q |
217 |
--agataaatttttcgactatctttttgtttatattttatcctcgagtgagtaaatttaaatgcttgtaactatagcacagcccttgaattgcacgaagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3234465 |
atagataaatttttcgactatctttttgtttatattttatcctcgagtgagtaaatttaaatgcttgtaactatagcacagcccttgaattgcacgaagc |
3234366 |
T |
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| Q |
315 |
cgtgaagaatgcatattcctttcc |
338 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3234365 |
cgtgaagaatgcatattcctttcc |
3234342 |
T |
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