View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_high_19 (Length: 309)

Name: NF19863_high_19
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_high_19
NF19863_high_19
[»] chr4 (9 HSPs)
chr4 (109-293)||(5437624-5437810)
chr4 (19-54)||(4268822-4268857)
chr4 (19-57)||(16536199-16536237)
chr4 (129-181)||(5486286-5486338)
chr4 (19-55)||(16821003-16821039)
chr4 (19-55)||(37402758-37402794)
chr4 (19-57)||(29591340-29591378)
chr4 (19-57)||(54054680-54054718)
chr4 (19-56)||(7769089-7769126)
[»] chr1 (11 HSPs)
chr1 (19-56)||(38701935-38701972)
chr1 (19-58)||(18043313-18043352)
chr1 (19-55)||(21112680-21112716)
chr1 (19-55)||(29210545-29210581)
chr1 (19-59)||(42769985-42770025)
chr1 (19-58)||(29657922-29657961)
chr1 (19-58)||(51065744-51065783)
chr1 (19-57)||(5694472-5694510)
chr1 (25-55)||(21117422-21117452)
chr1 (19-56)||(14350277-14350313)
chr1 (19-55)||(12072061-12072097)
[»] chr6 (7 HSPs)
chr6 (19-59)||(392247-392287)
chr6 (19-59)||(32929503-32929543)
chr6 (19-56)||(4215846-4215883)
chr6 (19-64)||(26467114-26467159)
chr6 (19-55)||(8701345-8701381)
chr6 (19-55)||(32985192-32985228)
chr6 (19-55)||(34706872-34706908)
[»] chr3 (5 HSPs)
chr3 (19-57)||(43787022-43787060)
chr3 (19-56)||(52520832-52520869)
chr3 (19-57)||(39074569-39074607)
chr3 (19-55)||(2938039-2938075)
chr3 (19-55)||(43269738-43269774)
[»] chr2 (6 HSPs)
chr2 (19-57)||(3668110-3668148)
chr2 (19-57)||(20553082-20553120)
chr2 (19-54)||(30486361-30486396)
chr2 (19-57)||(31438797-31438835)
chr2 (19-56)||(27856394-27856431)
chr2 (19-55)||(22068319-22068355)
[»] chr7 (4 HSPs)
chr7 (19-59)||(24438628-24438668)
chr7 (19-58)||(34333434-34333473)
chr7 (19-56)||(36786059-36786096)
chr7 (19-59)||(12218432-12218471)
[»] chr5 (5 HSPs)
chr5 (19-55)||(34650832-34650868)
chr5 (19-57)||(11957964-11958002)
chr5 (19-56)||(8787490-8787527)
chr5 (19-56)||(8927554-8927591)
chr5 (19-56)||(35132672-35132709)
[»] scaffold0188 (1 HSPs)
scaffold0188 (19-58)||(6106-6145)
[»] chr8 (3 HSPs)
chr8 (19-54)||(34228833-34228868)
chr8 (19-56)||(45185054-45185091)
chr8 (19-55)||(168617-168653)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 5437810 - 5437624
Alignment:
Q  109 attattttctttttaataagacggttgatatttggatttctgaaaaaagagtaaaaatcagat--ataaatcacagacttatccaatactccaatgcatt 206  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5437810 attattttctatttaataagatggttgatatttggatttctgaaaaaagagtaaaaatcagatgtataaatcacagacttatccaatactccaatgcatt 5437711  T
Q  207 acaatgttctaagtttttattttgagctctacaacttgcttccatggcttctcaacaaaagtcaaaatcgattcccctcaaaatatt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5437710 acaatgttctaagtttttattttgagctctacaacttgcttccatggcttctcaacaagagtcaaaatcgattcccctcaaaatatt 5437624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 4268857 - 4268822
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  4268857 taaccagtgccccgagggcaccggttagcaggaccc 4268822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16536199 - 16536237
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16536199 taaccagtgccccgggggcaccggttagcaggaccctta 16536237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 5486286 - 5486338
Alignment:
Q  129 acggttgatatttggatttctgaaaaaagagtaaaaatcagatataaatcaca 181  Q
    |||||||||  |||||||||||||| | |||||||||||| ||||||||||||    
T  5486286 acggttgatgcttggatttctgaaataggagtaaaaatcaaatataaatcaca 5486338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16821003 - 16821039
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16821003 taaccagtgccccgggggcaccggttagcaggaccct 16821039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 37402794 - 37402758
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||||||||||||||||||| ||||||    
T  37402794 taaccagtgccccgagggcaccggttagcatgaccct 37402758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 29591340 - 29591378
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  29591340 taactagtgccccgggggcaccggttagcaggaccctta 29591378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 54054680 - 54054718
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  54054680 taaccagtgccccgggggcaccggttggcaggaccctta 54054718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 7769089 - 7769126
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7769089 taacccgtgccccgggggcaccggttagcaggaccctt 7769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 38701972 - 38701935
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38701972 taaccagtgccccgagggcaccggttagcaggaccctt 38701935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 18043313 - 18043352
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaa 58  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18043313 taaccagtgccccgggggcaccggttagcaggacccttaa 18043352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21112716 - 21112680
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21112716 taactagtgccccgagggcaccggttagcaggaccct 21112680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 29210545 - 29210581
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29210545 taaccagtgccccgggggcaccggttagcaggaccct 29210581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 42770025 - 42769985
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaat 59  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  42770025 taaccagtgccccgggggcaccggttagcagaacccttaat 42769985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 29657922 - 29657961
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaa 58  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  29657922 taaccagtgccctgggggcaccggttagcaggacccttaa 29657961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 51065783 - 51065744
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaa 58  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  51065783 taaccagtgccccaggggcaccggttagcaggacccttaa 51065744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 5694472 - 5694510
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  5694472 taaccagtgctccgggggcaccggttagcaggaccctta 5694510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 21117452 - 21117422
Alignment:
Q  25 gtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||||||||||||||||||||    
T  21117452 gtgccccgagggcaccggttagcaggaccct 21117422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 14350313 - 14350277
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| |||||||||||||||||||||||    
T  14350313 taaccagtgccccg-gggcaccggttagcaggaccctt 14350277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 12072097 - 12072061
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| |||||||||||||||| |||||    
T  12072097 taaccagtgccccgggggcaccggttagcagcaccct 12072061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 392247 - 392287
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaat 59  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  392247 taaccagtgccccgggggcaccggttagcaggacccttaat 392287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32929543 - 32929503
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaat 59  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  32929543 taaccagtgccccgggggcaccggttagcaggacccttaat 32929503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 4215846 - 4215883
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  4215846 taaccagtgccccgggggcatcggttagcaggaccctt 4215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26467159 - 26467114
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaatcataa 64  Q
    ||||||||||||||  |||||||||||||| |||||||||| ||||    
T  26467159 taaccagtgccccggaggcaccggttagcatgacccttaattataa 26467114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 8701345 - 8701381
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| |||||||||||||||| |||||    
T  8701345 taaccagtgccccgggggcaccggttagcagcaccct 8701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 32985228 - 32985192
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| |||||||||||||||| |||||    
T  32985228 taaccagtgccccgggggcaccggttagcagaaccct 32985192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 34706872 - 34706908
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  34706872 taaccagtgccccgggggcaccggttagcaagaccct 34706908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 43787022 - 43787060
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43787022 taaccagtgccccgggggcaccggttagcaggaccctta 43787060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52520832 - 52520869
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| |||||||||||||||||||||||    
T  52520832 taaccagtgccccgggggcaccggttagcaggaccctt 52520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39074569 - 39074607
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39074569 taaccagtgccccaggggcaccggttagcaggaccctta 39074607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 2938075 - 2938039
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  2938075 taacgagtaccccgagggcaccggttagcaggaccct 2938039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 43269774 - 43269738
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    ||||||||||||||  |||||||||||||||||||||    
T  43269774 taaccagtgccccggaggcaccggttagcaggaccct 43269738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 3668148 - 3668110
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3668148 taaccagtgccccgagggcaccggttagcaagaccctta 3668110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 20553082 - 20553120
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  20553082 taaccagtgccccgggggcaccggttagcaggaccctta 20553120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 30486361 - 30486396
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccc 54  Q
    |||||||||||||| |||||||||||||||||||||    
T  30486361 taaccagtgccccgggggcaccggttagcaggaccc 30486396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 31438797 - 31438835
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||| || |||||||||||||||||||||    
T  31438797 taaccagtgccccggggacaccggttagcaggaccctta 31438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 27856431 - 27856394
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  27856431 taaccagtgccccgggggcatcggttagcaggaccctt 27856394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 22068355 - 22068319
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| |||||||| |||||||||||||    
T  22068355 taaccagtgccccgggggcaccgattagcaggaccct 22068319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 24438628 - 24438668
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaat 59  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  24438628 taaccagtgccccgggggcaccggttagcaggacccataat 24438668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 34333434 - 34333473
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaa 58  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  34333434 taacccgtgccccgggggcaccggttagcaggacccttaa 34333473  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36786059 - 36786096
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  36786059 taaccagtgccccgggggcaccggttagcagcaccctt 36786096  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 12218471 - 12218432
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaat 59  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  12218471 taaccagtgccccg-ggacaccggttagcaggacccttaat 12218432  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34650868 - 34650832
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34650868 taaccagtgccccgggggcaccggttagcaggaccct 34650832  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 11958002 - 11957964
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctta 57  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  11958002 taaccagtgccccaggggcaccggttagcaggaccctta 11957964  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 8787490 - 8787527
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  8787490 taacctgtgccccgggggcaccggttagcaggaccctt 8787527  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 8927591 - 8927554
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||  |||||||||||||||||||||||    
T  8927591 taaccagtgccccaggggcaccggttagcaggaccctt 8927554  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 35132672 - 35132709
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  35132672 taaccaatgccccgggggcaccggttagcaggaccctt 35132709  T

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Target: scaffold0188 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 6145 - 6106
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggacccttaa 58  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  6145 taacccgtgccccgggggcaccggttagcaggacccttaa 6106  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 34228833 - 34228868
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccc 54  Q
    |||||||||||||| |||||||||||||||||||||    
T  34228833 taaccagtgccccgggggcaccggttagcaggaccc 34228868  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 45185054 - 45185091
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccctt 56  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  45185054 taaccagtgccccgggggcaccggttagcagcaccctt 45185091  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 168617 - 168653
Alignment:
Q  19 taaccagtgccccgagggcaccggttagcaggaccct 55  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  168617 taaccaatgccccgggggcaccggttagcaggaccct 168653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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