View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_25 (Length: 276)
Name: NF19863_high_25
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 9379104 - 9379353
Alignment:
| Q |
18 |
ttttgcacaacaatgtgtggcatgatagaaatgattttta-cctaactgtatatttttctagaaatagcaacttaattgattggtcaccnnnnnnnctat |
116 |
Q |
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| T |
9379104 |
ttttgcacaacaatgtgtggcatgatagaaatgatttttaacctaactgtatatttttctagaaatagcaacttaattgattggtcacctttttttctat |
9379203 |
T |
|
| Q |
117 |
aaagattgatcactttatatcacgtttttcatgctgaataggatgtctccaaaattaaacgttagtatttgctaggaataaatcctcaagctttttaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9379204 |
aaagattgatcactttatatcacgtttttcatgctgaataggatgtctccaaaattaaacgttagtatttgctaggaataaatcctcaagctttgtaaca |
9379303 |
T |
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| Q |
217 |
tcccac-ttttttatcaagtcagctctcatttttctctaacatgagaatt |
265 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9379304 |
tcccactttttttatcaagtcagctctcatttttctctaacatgagaatt |
9379353 |
T |
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