View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_28 (Length: 264)
Name: NF19863_high_28
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 45856497 - 45856740
Alignment:
| Q |
15 |
attattatcactgggacaaaaggcgaaattccctaaatgcaagatagttaatgctggcaaattaagagattttggaaacaatgttttttccttaatatct |
114 |
Q |
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| T |
45856497 |
attattatcactgggacaaaaggcgaaattccctagatgcaagatagttaatgctggcaaattgagagattttggaaacaatgttttttccttaatatct |
45856596 |
T |
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| Q |
115 |
gttctagggtaagcatagagcttaagacatgttaaagtcttgcatgaaaagatgctattggaaattagttcaatgtcacacagataagatagttttaact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45856597 |
gttctagggtaagcatagagcttaagacatgttaaagtcttgcatgaaaagatgctattggaaattagttcaatgtcacacagataagatagttttaact |
45856696 |
T |
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| Q |
215 |
cttggacattgtgtgaaatagcataattcacaacctttttgagt |
258 |
Q |
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| T |
45856697 |
cttggacattgtgtgaaatagcataattcacaacctttttgagt |
45856740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 45881546 - 45881689
Alignment:
| Q |
30 |
acaaaaggcgaaattccctaaatgcaagatagttaatgctggcaaattaagagattttggaaacaatgttttttccttaatatctgttctagggtaagca |
129 |
Q |
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| T |
45881546 |
acaaaaggaaaaattccctagatgcaaggtagttaatgctggaaaattgaaagattttggaaacaatgttttttccttaatatctgttctagggtaagca |
45881645 |
T |
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| Q |
130 |
tagagcttaagacatgttaaagtcttgcatgaaaagatgctatt |
173 |
Q |
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| T |
45881646 |
taaagcttaagatatattaaagtctcacatgaaaagattctatt |
45881689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 20981719 - 20981756
Alignment:
| Q |
217 |
tggacattgtgtgaaatagcataattcacaaccttttt |
254 |
Q |
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| T |
20981719 |
tggacattgtgtgaaatagcgtaattcacaatcttttt |
20981756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 20994878 - 20994915
Alignment:
| Q |
217 |
tggacattgtgtgaaatagcataattcacaaccttttt |
254 |
Q |
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| T |
20994878 |
tggacattgtgtgaaatagcgtaattcacaatcttttt |
20994915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 45881730 - 45881768
Alignment:
| Q |
218 |
ggacattgtgtgaaatagcataattcacaacctttttgagt |
258 |
Q |
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| T |
45881730 |
ggacattgtg--aaatagcataattcacaacctttttgagt |
45881768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 7976622 - 7976663
Alignment:
| Q |
217 |
tggacattgtgtgaaatagcataattcacaacctttttgagt |
258 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |
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| T |
7976622 |
tggacattgtgtgaaatagcataattcacaatccttttgagt |
7976663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 247
Target Start/End: Complemental strand, 7895265 - 7895234
Alignment:
| Q |
216 |
ttggacattgtgtgaaatagcataattcacaa |
247 |
Q |
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| T |
7895265 |
ttggacattgtgtgaaatagcataattcacaa |
7895234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 7976463 - 7976511
Alignment:
| Q |
52 |
tgcaagatagttaatgctggcaaattaagagattttggaaacaatgttt |
100 |
Q |
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|||||| |||||| ||| |||||||| | |||||||||||||||||||| |
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| T |
7976463 |
tgcaagctagttagtgccggcaaattgaaagattttggaaacaatgttt |
7976511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 36591019 - 36591095
Alignment:
| Q |
19 |
ttatcactgggacaaaaggcgaaattccctaaatgcaagatagttaatgctggcaaattaagagattttggaaacaa |
95 |
Q |
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|||||||| | ||||||| |||||||||||| |||||| | ||||| |||||||||| | |||||||||||||| |
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| T |
36591019 |
ttatcactagcacaaaagacgaaattccctagatgcaaactggttaacgctggcaaatccaatgattttggaaacaa |
36591095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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