View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_30 (Length: 261)
Name: NF19863_high_30
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_30 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 48273656 - 48273409
Alignment:
| Q |
12 |
aagaacaggaagggaattaaaggctgtgtcatggttcaatcaccaaaggacactagagagaagcattccaaagaattttccaaaaataagcatacgcaat |
111 |
Q |
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| T |
48273656 |
aagaacaggaagcgaattaaaggctgtgtcattgttcaatcaccaaaggacactagagagaagcattccaaagaattttccaaaaataagcatacgcaat |
48273557 |
T |
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| Q |
112 |
aattgtctactactcattatgggaagcctggtaacaattaacataagatgatcctacaaagtaatcaacaggtagaattttcagtgactttggagggatt |
211 |
Q |
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| T |
48273556 |
---tgtctactactcattatgggaagcctggtaacaattaacataagatgatcctacaaagtaatcaacaggtagaattttcagtgactttggagggatt |
48273460 |
T |
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| Q |
212 |
tacatttagtcaatgcatcaat-gactataacagaaattaaaattacttta |
261 |
Q |
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| T |
48273459 |
tacatttggtcaatgcatcaatggactataacagaaattaaaattacttta |
48273409 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 40857471 - 40857367
Alignment:
| Q |
159 |
atgatcctacaaagtaatcaacaggtagaattttcagtgactttggagggatttacatttagtcaatgcatcaatgactat---aacagaaattaaaatt |
255 |
Q |
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| T |
40857471 |
atgatcctaccaagta-tcaagaggtagaattttcaatgactttggagggactttcatttagtcaatgcatcaatgattatagaaacagaaattaaaatt |
40857373 |
T |
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| Q |
256 |
acttta |
261 |
Q |
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| T |
40857372 |
agttta |
40857367 |
T |
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