View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_35 (Length: 250)
Name: NF19863_high_35
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 19137264 - 19137021
Alignment:
| Q |
20 |
gaagaattagatcaactctatggtgcataaacaaaataactcttgcaccatacacaaacttgtttccccattttattattaaatt-------------ga |
106 |
Q |
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| T |
19137264 |
gaagaattagatcaactctatggtgcataaacaaaataactcttgcaccatacacaaacttgtttccccattttattattaaatttcactattaaattga |
19137165 |
T |
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| Q |
107 |
aaataaaatatgatgagatttatcatccaagggtagaaaatagattgtgcataatgcaagaatgatttgcttgtgcatgttagacaaaaccctagaatta |
206 |
Q |
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| T |
19137164 |
aaataaaatatgatgagatttatcatccaagggtagaaaatagattgtgcataatgcaagaatgatttgcttgtgcatgttagacaaaaccctagaatta |
19137065 |
T |
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| Q |
207 |
atatacaatcaacaatatgacaataattctaggcatttgatata |
250 |
Q |
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| T |
19137064 |
atatacaatcaacaatatgacaattattcaaggcatttgatata |
19137021 |
T |
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