View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_37 (Length: 244)
Name: NF19863_high_37
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45856735 - 45856976
Alignment:
| Q |
1 |
ttgagttggcgaggctcaatgcaaccactcttggaacattctagagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45856735 |
ttgagttggcgaggctcaatgcaaccactcttggaatattctagagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttgg |
45856834 |
T |
|
| Q |
101 |
tgaata-cttgaaagttcgaaagtcataggaatgcaatgtaagatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaac |
199 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45856835 |
tgaatatcttgaaagttcgaaagtcataggaacacaatgtaagatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaac |
45856934 |
T |
|
| Q |
200 |
tgcgtctttagcgttcagaaatgacagtatgtggagaataat |
241 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||| |
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| T |
45856935 |
cgcgtctttagcgttcagaaaagacagtatgtggaggataat |
45856976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45881763 - 45881962
Alignment:
| Q |
1 |
ttgagttggcgaggctcaatgcaaccactcttggaacattctagagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttgg |
100 |
Q |
| |
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|||||| ||||||||||||| ||||||| |||| |||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
45881763 |
ttgagtaggcgaggctcaattcaaccacacttgcaacaatctagagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttgg |
45881862 |
T |
|
| Q |
101 |
tgaata-cttgaaagttcgaaagtcataggaatgcaatgtaagatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaac |
199 |
Q |
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|||||| |||||| ||| |||||||||| |||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
45881863 |
tgaatatcttgaatgtttgaaagtcataagaatagaatgtaagatttggaagttgtttctagatatccttgcatcttggggacaaaatgcaagttccaac |
45881962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 45870386 - 45870567
Alignment:
| Q |
52 |
agtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtcataggaatgcaatgtaagatttggaa |
150 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| |||| ||||| ||||||||| ||| ||||||||||||||| ||||||||| ||||| |||| |
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| T |
45870386 |
agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa |
45870485 |
T |
|
| Q |
151 |
gttgtttccagagatccttgtatcttggggacaaaatgcaagttccaactgcgtctttagcgttcagaaatgacagtatgtg |
232 |
Q |
| |
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| ||||||| |||||| | |||||||| || |||| ||||||| |||||||||||| || ||| ||| ||||||||||| |
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| T |
45870486 |
gacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtg |
45870567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 20994965 - 20995134
Alignment:
| Q |
52 |
agtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtcataggaatgcaatgtaagatttggaa |
150 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||| |||||||| ||||||||||||| |||| |
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| T |
20994965 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaa |
20995064 |
T |
|
| Q |
151 |
gttgtttccagagatccttgtatcttggggacaaaatgcaagttccaactgcgtctttagcgttcagaaa |
220 |
Q |
| |
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| ||||||| |||||||| ||| ||||||| |||| |||||| ||| |||||||| | ||||||||| |
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| T |
20995065 |
gacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcgtctttggtgttcagaaa |
20995134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 20948864 - 20948731
Alignment:
| Q |
54 |
tgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtcataggaatgcaatgtaagatttggaagt |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| | |||| |||||| | | |||| ||| ||||| | || | |
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|
| T |
20948864 |
tgcgatagagggatcacgaagagataaaatcttagacacaaacttggtgaatatcttgtatgttctaaagtctttgcaatgtaatctaagagtgggtatg |
20948765 |
T |
|
| Q |
153 |
tgtttccagagatccttgtatcttggggacaaaa |
186 |
Q |
| |
|
||||||||||||| || ||||||| ||| |||| |
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|
| T |
20948764 |
cgtttccagagatcgttatatcttgtggataaaa |
20948731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 2996392 - 2996459
Alignment:
| Q |
58 |
atagaggaatcacgaagagataaaaccttagacacaaagttggtgaa-tacttgaaagttcgaaagtc |
124 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||| | |||| ||||||||||||| |
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|
| T |
2996392 |
atagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagttcgaaagtc |
2996459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 20981806 - 20981879
Alignment:
| Q |
52 |
agtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtc |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||| | |||||||| |
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|
| T |
20981806 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaattacgaaagtc |
20981879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 20949552 - 20949484
Alignment:
| Q |
57 |
gatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtc |
124 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || |||||||||| |||| |||||| |||||| |
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|
| T |
20949552 |
gatagaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagttctaaagtc |
20949484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 20977532 - 20977468
Alignment:
| Q |
61 |
gaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtc |
124 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| || |||||||||| |||| |||||| |||||| |
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|
| T |
20977532 |
gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagttctaaagtc |
20977468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 3978293 - 3978141
Alignment:
| Q |
43 |
agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaa-tacttgaaagttcgaaagtcataggaatgcaatgtaa |
141 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| ||||||| |||||||| || ||||||| | |||| ||| || |||||| | ||||||||||||| |
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|
| T |
3978293 |
agagcttgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaa |
3978194 |
T |
|
| Q |
142 |
gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagtt |
194 |
Q |
| |
|
|| | ||||| ||||||| |||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
3978193 |
gagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtt |
3978141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 44501338 - 44501535
Alignment:
| Q |
43 |
agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaata-cttgaaagttcgaaagtcataggaatgcaatgtaa |
141 |
Q |
| |
|
|||| ||| |||| |||||||||||| |||||||||||||||||||||| || || |||||| ||||||||| |||| || | |||||| | ||| |
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|
| T |
44501338 |
agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgaaagtgtgaaaatctgaagaatgc--tataa |
44501435 |
T |
|
| Q |
142 |
gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaactgcgtctttagcgttcagaaatgacagtatgtggagaataat |
241 |
Q |
| |
|
| ||||| ||||||| |||||||| |||| ||||||||||||||||| ||| |||| ||| || |||| ||| ||||||||||| || ||||| |
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|
| T |
44501436 |
gtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataat |
44501535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 7895166 - 7895121
Alignment:
| Q |
60 |
agaggaatcacgaagagataaaaccttagacacaaagttggtgaat |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
7895166 |
agaggaattgcgaagagataaaaccttagacacaaattttgtgaat |
7895121 |
T |
|
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