View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_38 (Length: 243)
Name: NF19863_high_38
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48273202 - 48272978
Alignment:
| Q |
1 |
actttttaaaagagagtctgagctaaggaagaaatatagcgtagaaattaaattagaacaaaaaataggcaagaaagagagttagagcttaaacaggagg |
100 |
Q |
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| T |
48273202 |
actttttaaaagagagtctgagctaaggaagaaatatagcgtagaaattaaattagaacaaaaaataggcaagaaagagagttagagcttaaacaggagg |
48273103 |
T |
|
| Q |
101 |
aaacatatttattttgacattccatgattaaagcctgataatgtaggccggctttcaaactttttgactctaagatgatcagagccctttgctttctgag |
200 |
Q |
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| T |
48273102 |
aaacaaatttattttgacattccatgattaaagcctgataatgtaggccggctttcaaactttttgactctaagatgatcagagccctttgctttctgag |
48273003 |
T |
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| Q |
201 |
taatgattaaatgtgttcaaacttc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
48273002 |
taatgattaaatgtgttcaaacttc |
48272978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 40857166 - 40857130
Alignment:
| Q |
188 |
tttgctttctgagtaatgattaaatgtgttcaaactt |
224 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
40857166 |
tttgctttctgagtaatgactaaatgtgttcaaactt |
40857130 |
T |
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