View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_high_6 (Length: 468)
Name: NF19863_high_6
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 51877724 - 51878169
Alignment:
| Q |
1 |
taacattatcttttacaagacctaattttgtacgatatacaattttatatatgaaaatgctaatgagttttctaattgcactccataaggactttatata |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| |||| |||||||||| |
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| T |
51877724 |
taacattatcttttacaagatctaattttgtacgatatacaattttatatatggaaatgctaacgagttttctaattgtaatccttaagaactttatata |
51877823 |
T |
|
| Q |
101 |
gtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgaccagagatcatatatataggaagaaaagaaacttattaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
51877824 |
gtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgcccagagatcatat----aggaagaaaagaaacttattaaaga |
51877919 |
T |
|
| Q |
201 |
atggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactctacatattgtttcttcttttctgatcacactaggaaactccttgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51877920 |
atggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactctacatattgtttcttcttttctgatcacactaggaaactccttgcaa |
51878019 |
T |
|
| Q |
301 |
ctttaataataccttatacaatcaaatacaatggaataccaaatgtcatactccattatcttcaattccctacaaaacagtatcactaatcctcctttct |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51878020 |
ctttaataataccgtatacaatcaaatacaatggaataccaaatgtcatactccattatcttcaattccctacaaaactgtatcactaatcctcctttct |
51878119 |
T |
|
| Q |
401 |
cttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaa |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51878120 |
cttccttcccattaaccagatcaaattggcatgaccataaaagtcacaaa |
51878169 |
T |
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