View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_1 (Length: 768)
Name: NF19863_low_1
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 721; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 1 - 749
Target Start/End: Complemental strand, 26517704 - 26516956
Alignment:
| Q |
1 |
gagcattcttctagcgacttagattttgatgaaaaacgtagaaggtgatcgacttcttttgatattgttcttaccttcactgttttattctgttggtctt |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26517704 |
gagcattcttctagcgacttagattctgatgaagaacgtagaaggtgatcgacttcttttgatattgttcttaccttcactgttttattctgttggtctt |
26517605 |
T |
|
| Q |
101 |
tcataattggggaatctaactgtatactcatatcagatatgatgaacaaatggaagatttacttgaacaagcttacgagcggttcgtgataaaaaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26517604 |
tcataattggggaatctaactgtatactcatatcagatatgatgaacaaatggaagatttacttgaacaagcttacgagcggttcgtgataaaaaaggaa |
26517505 |
T |
|
| Q |
201 |
gggactgcaaagcagcgtaagcgtattaagaaattttatgatgcagactctctacttttggaggtatggagctctcttttgtgattgtagatgtaattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26517504 |
gggactgcaaagcagcgtaagcgtattaagaaattttatgatgcagactctctacttttggaggtatggagctctcttttgtgattgtagatgtaattat |
26517405 |
T |
|
| Q |
301 |
tataccttcagttttgtgagttatataaagggaaatgaaactatatccgattcatgaaactattatcttcacattatattcccattcctttaattccagt |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26517404 |
tataccttcaggtttgtgagttatataaagggaaatgaaactatatccgattcatgaaactattatcttcacattatattcccattcctttaattccagt |
26517305 |
T |
|
| Q |
401 |
ttcctttactttcttgctcccattcaacatagcctatgcccaatatttaatatgcagcttaccggtaatatttttatgttggcattgttagtttttcctg |
500 |
Q |
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| T |
26517304 |
ttcctttactttcttgctcccattcaacatagcctatgcccaatatttcatatgcagcttaccggtaatatttttatgttggcattgttagtttttcctg |
26517205 |
T |
|
| Q |
501 |
cttggacctctctttaagaccggtatttttgtgatgtcaaatgtgttagttattgttgaaaactgtggcacgacacatcctttttattccgtgtgcaaaa |
600 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26517204 |
cttggacctctctttaagacctgtatttttgtgatgtcaaatgtgttagttattgttgaaaactgtggcacgacacatcctttttattccgtgtgcaaaa |
26517105 |
T |
|
| Q |
601 |
acaaatatttacacatgtactattaccttttggcttctaagctggtgaagatgatgacattgttcagtccaagtatgattcagttgaagatgatgttcaa |
700 |
Q |
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| T |
26517104 |
acaaatatttacacatgtactattaccttttggcttgtaagctggtgaagatgatgacattgttcagtccaagtatgattcagttgaagatgatgttcaa |
26517005 |
T |
|
| Q |
701 |
gaagcaaatcctttgttggtgccacttactgatggtacagggcccaccc |
749 |
Q |
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| T |
26517004 |
gaagcaaattctttgttggtgccacttactgatggtacagggcccaccc |
26516956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 322 - 749
Target Start/End: Complemental strand, 30373910 - 30373474
Alignment:
| Q |
322 |
tatataaagggaaatgaaactatatccgattcatgaaa-ctattatcttcacattatattcccattcctttaattccagtttcctttactttcttgctcc |
420 |
Q |
| |
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||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| | |
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| T |
30373910 |
tatataaagggaaatgaaattatacccgatttttgaaaactattatcttcacattatattcccattcctttaattctagtttcctctgatttctcccctt |
30373811 |
T |
|
| Q |
421 |
cattcaac--atagcctatgcccaatatttaatatgcagcttaccggtaatat--------ttttatgttggcattgttagtttttcctgcttggacctc |
510 |
Q |
| |
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||||||| ||| |||||| | ||||||||||||| ||||||| || ||||| ||| ||||||| |||||||||||| |||||| ||||||| |
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| T |
30373810 |
cattcaaataatatcctatgtcaaatatttaatatgaagcttactggaaatatacactcgttttcatgttggtattgttagttttacctgctcggacctc |
30373711 |
T |
|
| Q |
511 |
tctttaagaccggtattttt--gtgatgtcaaatgtgttagttattgttgaaaactgtggcacgacacatcctttttattccgtgtgcaaaaacaaatat |
608 |
Q |
| |
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||||| ||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| || | ||||||||||||||||||||||||||| |||||| |
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| T |
30373710 |
cctttaggactggtatttttttgtgatgtcaaatgtgttggttattgttgagaactgtggaactagacatcctttttattccgtgtgcaaaaagaaatat |
30373611 |
T |
|
| Q |
609 |
ttacacatgtactattaccttttggcttctaagctggtgaagatgatgacattgttcagtccaagtatgattcagttgaagat---gatgttcaagaagc |
705 |
Q |
| |
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|||||| |||||| |||| ||| || ||||||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||||||||||| |
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| T |
30373610 |
ttacacgtgtactgttac-------cttgtaggctggtgaagatgatgacattgttccgtccaaatatgattcagatgacgatcaggatgttcaagaagc |
30373518 |
T |
|
| Q |
706 |
aaatcctttgttggtgccacttactgatggtacagggcccaccc |
749 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30373517 |
aaatcctttgatggtgccacttactgatggtacagggcccaccc |
30373474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 78 - 300
Target Start/End: Complemental strand, 30374396 - 30374176
Alignment:
| Q |
78 |
cactgttttattctgttggtctttcataattggggaatctaactgtatactcatatcagatatgatgaacaaatggaagatttacttgaacaagcttacg |
177 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
30374396 |
cactgttttattctgttggtctttcataactggggaatctaactgtatactcaaatcagatatgatgaacaaatggaggatttacttgaacaagcttatg |
30374297 |
T |
|
| Q |
178 |
agcggttcgtgataaaaaaggaagggactgcaaagcagcgtaagcgtattaagaaattttatgatgcagactctctacttttggaggtatggagctctct |
277 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||||| | |||||||||||||||||| || | |
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| T |
30374296 |
agcggtttgtgataaaaaaggaagggactgcacagcagcgtaagcgtatcaagaaatcctacgatgcagactcccaacttttggaggtatggag--cttt |
30374199 |
T |
|
| Q |
278 |
tttgtgattgtagatgtaattat |
300 |
Q |
| |
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|||||||||||| ||||| |||| |
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| T |
30374198 |
tttgtgattgtatatgtagttat |
30374176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30374747 - 30374673
Alignment:
| Q |
1 |
gagcattcttctagcgacttagattttgatgaaaaacgtagaaggtgatcgac---ttcttttgatattgttctt |
72 |
Q |
| |
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|||||||| ||||| |||||||||| ||| ||| |||||||||||||| | || ||||||||||||||||||| |
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| T |
30374747 |
gagcattcatctagtgacttagattctgacgaagaacgtagaaggtgaacaactggttcttttgatattgttctt |
30374673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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