View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_10 (Length: 421)

Name: NF19863_low_10
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_low_10
NF19863_low_10
[»] chr4 (1 HSPs)
chr4 (1-415)||(24727366-24727779)
[»] chr7 (1 HSPs)
chr7 (199-259)||(42419767-42419827)
[»] chr6 (2 HSPs)
chr6 (40-110)||(32367288-32367355)
chr6 (330-377)||(34253728-34253775)
[»] chr8 (1 HSPs)
chr8 (77-118)||(14179291-14179332)
[»] chr5 (1 HSPs)
chr5 (320-377)||(31987490-31987547)
[»] chr1 (3 HSPs)
chr1 (74-168)||(20731711-20731808)
chr1 (320-355)||(26379248-26379283)
chr1 (320-377)||(14725041-14725099)
[»] chr2 (1 HSPs)
chr2 (320-377)||(27557206-27557263)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 24727779 - 24727366
Alignment:
Q  1 ggaaaaattcttggacctaccactttataagtgttggagatagtcttacttgaacacatgtattaggacacactattatttaaacacacacatcaaaatg 100  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||   ||||||||||||||||||||    
T  24727779 ggaaaaattctttgacccaccactttataagtgttggagatagtcttacttgaaaaaatgtatttggacacactatt---taaacacacacatcaaaatg 24727683  T
Q  101 tattttacttgattctttnnnnnnnnn--tattattcaattatattctgtttccactttttctcattattcaacaaaaatgtgaaacattataaattcaa 198  Q
    ||||||||||||||||||           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24727682 tattttacttgattctttaaaaaaaaaaatattattcaattatattctgtttccaccttttctcattattcaacaaaaatgtgaaacattataaattcaa 24727583  T
Q  199 atcatagaaagagatagaaacggtaacaaaaaataagctcaactcaaagtaaaaacaagattattaaagtgaatgttatacttgatgaccaagcatcgtt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24727582 atcatagaaagagatagaaacggtaacaaaaaataagctcaactcaaagtaaaaacaagattattaaagtgaatgttatacttgatgaccaagcatcgtt 24727483  T
Q  299 tgtttcaaattgttgggttattcttactaaggtgtttattctttccaactttccactatagcttactagtgttccaacatgagatactcgtacacgagtt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  24727482 tgtttcaaattgttgggttattcttactaaggtgtttattctttccaactttccactataacttactagtgttccaacatgagatacttgtacacgagtt 24727383  T
Q  399 tatatcgtgatgatgtc 415  Q
    |||||||||||||||||    
T  24727382 tatatcgtgatgatgtc 24727366  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 42419767 - 42419827
Alignment:
Q  199 atcatagaaagagatagaaacggtaacaaaaaataagctcaactcaaagtaaaaacaagat 259  Q
    ||||||||||||||||  |||| |||||| |||||||||||||||||| ||||||||||||    
T  42419767 atcatagaaagagataccaacgataacaacaaataagctcaactcaaaataaaaacaagat 42419827  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 32367288 - 32367355
Alignment:
Q  40 atagtcttacttgaacacatgtattaggacacactattatttaaacacacacatcaaaatgtattttactt 110  Q
    |||||||||||| | |||||||||| ||||||||| ||   ||||||||||||||||||||||||||||||    
T  32367288 atagtcttacttaagcacatgtatttggacacactgtt---taaacacacacatcaaaatgtattttactt 32367355  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 34253775 - 34253728
Alignment:
Q  330 gtgtttattctttccaactttccactatagcttactagtgttccaaca 377  Q
    |||||||||||||| ||||||||||||||  || ||||||||||||||    
T  34253775 gtgtttattctttcaaactttccactataaattgctagtgttccaaca 34253728  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 14179332 - 14179291
Alignment:
Q  77 tatttaaacacacacatcaaaatgtattttacttgattcttt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  14179332 tatttaaacacacacatcaaaatgtattttacttaattcttt 14179291  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 31987490 - 31987547
Alignment:
Q  320 tcttactaaggtgtttattctttccaactttccactatagcttactagtgttccaaca 377  Q
    |||||| |||||||||||||||| |||||||||||| || ||| ||||||||||||||    
T  31987490 tcttaccaaggtgtttattcttttcaactttccactgtaacttgctagtgttccaaca 31987547  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 20731711 - 20731808
Alignment:
Q  74 tattatttaaacac--acacatcaaaatgtattttacttgattcttt-nnnnnnnnntattattcaattatattctgtttccactttttctcattatt 168  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||          |||||||||| ||| |||| |||||||||||||||||||||    
T  20731711 tattatttaaacacacacacatcaaaatgtattttacttaattctttaaaaaataaatattattcaactattttctctttccactttttctcattatt 20731808  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 26379283 - 26379248
Alignment:
Q  320 tcttactaaggtgtttattctttccaactttccact 355  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26379283 tcttactaaggtgtttattctatccaactttccact 26379248  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 14725041 - 14725099
Alignment:
Q  320 tcttactaaggtgtttattctttccaac-tttccactatagcttactagtgttccaaca 377  Q
    |||||| ||||||||||||||||||||| |||||||  || ||| ||||||||||||||    
T  14725041 tcttaccaaggtgtttattctttccaacttttccacattatcttgctagtgttccaaca 14725099  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 27557206 - 27557263
Alignment:
Q  320 tcttactaaggtgtttattctttccaac-tttccactatagcttactagtgttccaaca 377  Q
    ||||||||||||||||||||| |||||| |||||||||| | ||||||| |||||||||    
T  27557206 tcttactaaggtgtttattctatccaacttttccactattg-ttactagagttccaaca 27557263  T

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