View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_12 (Length: 402)

Name: NF19863_low_12
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_low_12
NF19863_low_12
[»] chr5 (3 HSPs)
chr5 (1-180)||(31528306-31528485)
chr5 (242-386)||(31528547-31528691)
chr5 (6-135)||(31497584-31497712)
[»] chr3 (3 HSPs)
chr3 (58-129)||(42159850-42159921)
chr3 (20-120)||(25428732-25428830)
chr3 (20-119)||(17642654-17642751)
[»] chr8 (1 HSPs)
chr8 (41-87)||(39418146-39418192)
[»] chr1 (1 HSPs)
chr1 (42-88)||(11794982-11795028)
[»] chr2 (1 HSPs)
chr2 (41-129)||(38216457-38216543)
[»] chr6 (1 HSPs)
chr6 (21-124)||(23095048-23095149)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 31528306 - 31528485
Alignment:
Q  1 ttgtatatttgagagattggttttttagagtatgaaaagagaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528306 ttgtatatttgagagattggttttttagagtataaaaagaaaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaa 31528405  T
Q  101 tttgaataatttatctaaactctctaaaaccttctnnnnnnntttctcaaatgcatttttaactatcaaaggaaaataaa 180  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  31528406 tttgaataatttatctaaactctctaaaaccttctaaaaaaatttctcaaatgcatttttaactatcaaaggaaaataaa 31528485  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 31528547 - 31528691
Alignment:
Q  242 agagctctatcctaaccaccaagccatagccttaaattcannnnnnnnnnctgttatttttaaaatattcgaggtgaactttactttcannnnnnnggtt 341  Q
    ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||| ||||||||||||||||       ||||    
T  31528547 agagctctatcctaaccaccaagccatagccttaaattcattttttttttctgttatttttaaaatattcgatgtgaactttactttcatttttttggtt 31528646  T
Q  342 tgcctacaagttccttccaccatagataatcatattcgagatatt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31528647 tgcctacaagttccttccaccatagataatcatattcgagatatt 31528691  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 31497584 - 31497712
Alignment:
Q  6 tatttgagagattggttttttagagtatgaaaagagaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaa-tttg 104  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| ||  | ||||| ||||||||||||||||| ||||  | ||||||||| ||||    
T  31497584 tatttgagagattggttttctagagtatggaaagaaaatatttatgacta--acatattcttaattttgagaatattataaagacgttgaaagaattttg 31497681  T
Q  105 aataatttatctaaactctctaaaaccttct 135  Q
    ||||||||||||||||||| |||||| ||||    
T  31497682 aataatttatctaaactctttaaaactttct 31497712  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 42159850 - 42159921
Alignment:
Q  58 atatatttttaattttgagaatattgtaaaatcattgaaagaatttgaataatttatctaaactctctaaaa 129  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||    
T  42159850 atatatctttaattttgagagtattataaaatcattgaaagaatttgaagaatttatttaagctctcaaaaa 42159921  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 25428830 - 25428732
Alignment:
Q  20 gttttttagagtatgaaaagagaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaatttgaataatttatctaaa 119  Q
    ||||||||||| |||| || | |||| ||||||||||  |||| |||||||||| |||||||| ||| | ||| ||  ||||||||| ||||||| ||||    
T  25428830 gttttttagagaatgataaaataatacttatgattaa--tatacttttaattttaagaatattataacaacatagattgaatttgaaaaatttatataaa 25428733  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 17642751 - 17642654
Alignment:
Q  20 gttttttagagtatgaaaagagaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaatttgaataatttatctaaa 119  Q
    ||||||||||| |||| ||   |||||||||||||||  |||| |||||||||| |||||||| ||| | ||| ||  ||||||||| ||||||| ||||    
T  17642751 gttttttagagaatgataaactaatatttatgattaa--tatacttttaattttaagaatattataacaacatggattgaatttgaaaaatttatataaa 17642654  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 39418192 - 39418146
Alignment:
Q  41 gaatatttatgattaatatatatttttaattttgagaatattgtaaa 87  Q
    |||| |||||||||||||||||||||| ||||||| |||||| ||||    
T  39418192 gaatgtttatgattaatatatattttttattttgaaaatattataaa 39418146  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 11794982 - 11795028
Alignment:
Q  42 aatatttatgattaatatatatttttaattttgagaatattgtaaaa 88  Q
    |||| ||||||||||||||||||||||| ||||||| |||| |||||    
T  11794982 aatacttatgattaatatatatttttaagtttgagagtattataaaa 11795028  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 38216457 - 38216543
Alignment:
Q  41 gaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaatttgaataatttatctaaactctctaaaa 129  Q
    |||| ||||||||||||||  |||||||||||| ||| |||| ||||| ||| ||  ||||||||| || |||||||||| ||| ||||    
T  38216457 gaatgtttatgattaatat--atttttaatttttagagtattataaaaacatagattgaatttgaagaaattatctaaaccctccaaaa 38216543  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 23095048 - 23095149
Alignment:
Q  21 ttttttagagtatgaaaagagaatatttatgattaatatatatttttaattttgagaatattgtaaaatcattgaaagaatttgaataatttatctaaac 120  Q
    |||||||||| |||| || | |||| |||||||||  ||||| |||||||||| |||||||| ||| | ||| ||  ||||||||| |||| || |||||    
T  23095048 ttttttagagaatgataaaataatacttatgatta--atatacttttaattttaagaatattataacaacatagattgaatttgaaaaattcatataaac 23095145  T
Q  121 tctc 124  Q
    ||||    
T  23095146 tctc 23095149  T

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