View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_13 (Length: 396)
Name: NF19863_low_13
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 7351142 - 7350950
Alignment:
| Q |
17 |
tgtgtgaaacatatcttaccatgcttttgatcaaccacgacctcatactaatttaatgtctgatcgatcatcttgatgtaacactatactaaatcatatc |
116 |
Q |
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| T |
7351142 |
tgtgtgaaacatatcttgccatgcttttggtcaaccacgacctcatactaatttaatgtctgattgatcatcttgatgtaacggtatactaaatcatatc |
7351043 |
T |
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| Q |
117 |
caacctccttatcagacattttcctaaatgtatgacatcctgctaacatattagagtgtagcattaatacaccataaaacgcttaaaaaacat |
209 |
Q |
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| T |
7351042 |
caacctccttatcaaacattttcctaaatgtattacatcctgctaacatattagattgtagcattaatacaccataaaacacttaaaaaacat |
7350950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 230 - 377
Target Start/End: Complemental strand, 7349737 - 7349596
Alignment:
| Q |
230 |
catttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaa |
329 |
Q |
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| T |
7349737 |
catttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaac------aaaggtagcttcctcttcatcgttgacaatttgaa |
7349644 |
T |
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| Q |
330 |
tattactcaaaaatgtataaaaatgttaattagattttgaatgcagtt |
377 |
Q |
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| T |
7349643 |
tattactcaaaaatgtatgaaaatgttaattagattttgaatgcagtt |
7349596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 24259190 - 24259051
Alignment:
| Q |
232 |
tttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaata |
331 |
Q |
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| T |
24259190 |
tttaacatcttttctaattttgcatcaatacttattcatttttaatgtcaatttaac------aaaggtagctacctcttcatcgttgacaattggaata |
24259097 |
T |
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| Q |
332 |
ttactcaaaaatgtataaaaatgttaattagattttgaatgcagtt |
377 |
Q |
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| T |
24259096 |
ttactaaaaaatgtatgaaaatgtgaatgagattttgaatgcagtt |
24259051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 54933848 - 54933987
Alignment:
| Q |
232 |
tttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaata |
331 |
Q |
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| T |
54933848 |
tttaacatcttttctaattttgcatcaatacttattcatttttaatgtcaattta------acaaaggtagctacctcttcatcgttgacaattggaata |
54933941 |
T |
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| Q |
332 |
ttactcaaaaatgtataaaaatgttaattagattttgaatgcagtt |
377 |
Q |
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| T |
54933942 |
ttactcaaaaatgtatgaaaatgtgaatgagattttgattgcagtt |
54933987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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