View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19863_low_16 (Length: 368)
Name: NF19863_low_16
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 39456134 - 39455782
Alignment:
| Q |
1 |
aagtgaaacagcaatgtatatttaccacattaagcagctctttatttgagagattgtcaggcactaaatctatgcacctctgacctttttgtatgtggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
39456134 |
aagtgaaacagcaatgtatatttaccacattaaacagctctttctttgagagattgtcgggcactaaatatgtgcacctctgacctttttgtatgtggat |
39456035 |
T |
|
| Q |
101 |
acttggacaatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39456034 |
acttggacaatttaatttgatacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctct |
39455935 |
T |
|
| Q |
201 |
tttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39455934 |
tttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttagg |
39455835 |
T |
|
| Q |
301 |
cccactactatactccatcctataatctagcgcaatctccacagcaatcttca |
353 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39455834 |
cccactactatactccaccctataatctagcgcaatctccacagcaatcttca |
39455782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 73 - 353
Target Start/End: Complemental strand, 39452434 - 39452154
Alignment:
| Q |
73 |
tgcacctctgacctttttgtatgtggatacttggacaatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagat |
172 |
Q |
| |
|
||||||||| || |||||||| || | |||| ||| | |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||| |||||| |
|
|
| T |
39452434 |
tgcacctcttacatttttgtaagtaggtactaggatagtttaatttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagat |
39452335 |
T |
|
| Q |
173 |
cctccctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaa |
272 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39452334 |
cctccttctaacagagtcttcttactcttttcactcatctctttcatttttttcctgaactctccatccttatccaacacactccttattcctttctcaa |
39452235 |
T |
|
| Q |
273 |
tcttgtccgaagttaaaagatagttaggcccactactatactccatcctataatctagcgcaatctccacagcaatcttca |
353 |
Q |
| |
|
||||||| | ||| |||||||||||||| ||||| || |||||| ||||||||||| |||||||||||| | |||||||| |
|
|
| T |
39452234 |
tcttgtcagcagtcaaaagatagttaggaccactgttaaactccaccctataatctaacgcaatctccacggaaatcttca |
39452154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 109 - 303
Target Start/End: Complemental strand, 39487863 - 39487669
Alignment:
| Q |
109 |
aatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactc |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
39487863 |
aatttaatttgatacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactc |
39487764 |
T |
|
| Q |
209 |
atctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggccc |
303 |
Q |
| |
|
|||||| ||||| ||||||| || ||||||||||||||||| | | |||||||||||||||||||||| |||| ||||| ||||||||||||||| |
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|
| T |
39487763 |
atctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagttacaagatagttaggccc |
39487669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 109 - 343
Target Start/End: Complemental strand, 39484663 - 39484429
Alignment:
| Q |
109 |
aatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactc |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||| | |||||||| |||||||||||||||||| | ||||| |||||| |
|
|
| T |
39484663 |
aatttaatttgatacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactc |
39484564 |
T |
|
| Q |
209 |
atctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactac |
308 |
Q |
| |
|
|| | ||||||| | ||| ||| |||||||||||||| ||| |||||||||||| |||||||||||||||| | | ||| ||||||||||| | ||| || |
|
|
| T |
39484563 |
atttttttcactttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttagactcaccac |
39484464 |
T |
|
| Q |
309 |
tatactccatcctataatctagcgcaatctccaca |
343 |
Q |
| |
|
|| |||||||||||||||| | |||||||||||| |
|
|
| T |
39484463 |
taaactccatcctataatccaatgcaatctccaca |
39484429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 109 - 353
Target Start/End: Original strand, 39457070 - 39457314
Alignment:
| Q |
109 |
aatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactc |
208 |
Q |
| |
|
|||||| ||||||||||| | | |||||||||| || ||| |||||||||||||| | ||||||||||| ||||||| ||||||||| || | ||||| |
|
|
| T |
39457070 |
aatttattttgatacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactc |
39457169 |
T |
|
| Q |
209 |
atctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactac |
308 |
Q |
| |
|
|||||||||||| | ||||| | |||||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||| | | | | |
|
|
| T |
39457170 |
atctctttcactttcttccttacctctccatccttatccaacacactctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccat |
39457269 |
T |
|
| Q |
309 |
tatactccatcctataatctagcgcaatctccacagcaatcttca |
353 |
Q |
| |
|
|| |||| | ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39457270 |
taaactctaacctataatctaatgcaatctccacagccatcttca |
39457314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 327
Target Start/End: Complemental strand, 39476920 - 39476692
Alignment:
| Q |
99 |
atacttggacaatttaatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgct |
198 |
Q |
| |
|
||||| ||| |||||||||| |||||| | ||||||||||||||| ||| ||||||||||| || |||||||||| || ||||||||||||||||| || |
|
|
| T |
39476920 |
atactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttact |
39476821 |
T |
|
| Q |
199 |
cttttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagtta |
298 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | ||| ||||||||||||| |||||||||||||||| |||||| || || | ||||| |||||||||| |
|
|
| T |
39476820 |
cttttcactcatctctttcactttcttccttacatctgcatccttatccaacacactccttattcctcgctcaattttatcggcagttacaagatagtta |
39476721 |
T |
|
| Q |
299 |
ggcccactactatactccatcctataatc |
327 |
Q |
| |
|
|||| || ||| |||||| ||||||||| |
|
|
| T |
39476720 |
ggcctaccacttaactccaccctataatc |
39476692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 131 - 301
Target Start/End: Original strand, 39463354 - 39463524
Alignment:
| Q |
131 |
ataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcctaa |
230 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||| | |
|
|
| T |
39463354 |
ataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttcctta |
39463453 |
T |
|
| Q |
231 |
actctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggc |
301 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| || | ||||| ||||||||||||| |
|
|
| T |
39463454 |
cttctccatccttatctaacacactccttattcctctctcaatcttatcagcagttacaagatagttaggc |
39463524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 353
Target Start/End: Complemental strand, 39461632 - 39461407
Alignment:
| Q |
128 |
ttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcc |
227 |
Q |
| |
|
|||| |||| |||| |||||| ||||||||| | || |||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| | || | |
|
|
| T |
39461632 |
ttcacaataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttctttc |
39461533 |
T |
|
| Q |
228 |
taaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactactatactccatcctataatc |
327 |
Q |
| |
|
| | |||||||||||| ||||| ||| ||||||||||||||||||||||||| | ||||| ||||||||||||| ||| | | |||||| |||||||| |
|
|
| T |
39461532 |
tgacctctccatccttttccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttaggctcaccattgaactccactctataatc |
39461433 |
T |
|
| Q |
328 |
tagcgcaatctccacagcaatcttca |
353 |
Q |
| |
|
|| | ||||||||||||| ||||||| |
|
|
| T |
39461432 |
taacacaatctccacagccatcttca |
39461407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 120 - 327
Target Start/End: Complemental strand, 39473417 - 39473210
Alignment:
| Q |
120 |
atacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcac |
219 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||| | | |||||||||| || ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39473417 |
atacctgattcataatataatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
39473318 |
T |
|
| Q |
220 |
tgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactactatactccatc |
319 |
Q |
| |
|
| | ||||| | ||||||||||||||||| |||||||||||||||||||||||||| || | ||||| ||||||||||||| ||| | || ||||| | |
|
|
| T |
39473317 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttaggcgcaccattaaactccgcc |
39473218 |
T |
|
| Q |
320 |
ctataatc |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
39473217 |
ctataatc |
39473210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 353
Target Start/End: Original strand, 43311309 - 43311549
Alignment:
| Q |
113 |
taatttgatacctggttcataatataatcaattaaatgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatct |
212 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| ||| |||||| ||||| | |||||||| ||||||||||| |||||| | | | ||||||||||| |
|
|
| T |
43311309 |
taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct |
43311408 |
T |
|
| Q |
213 |
ctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactactata |
312 |
Q |
| |
|
|||||||| | ||||| | ||||||||| | ||||| ||||||||||||||| |||| |||||||| |||| ||||||||| | | ||||| | || |
|
|
| T |
43311409 |
ctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagataatcacgcccaacatcgta |
43311508 |
T |
|
| Q |
313 |
ctccatcctataatctagcgcaatctccacagcaatcttca |
353 |
Q |
| |
|
||||||||||||||| | |||||||||||| | ||||||| |
|
|
| T |
43311509 |
ctccatcctataatccactgcaatctccacacccatcttca |
43311549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 342
Target Start/End: Original strand, 39452845 - 39452986
Alignment:
| Q |
201 |
tttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttagg |
300 |
Q |
| |
|
||||||| ||||||| |||| | || || | |||||||||||||| ||| |||||| |||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
39452845 |
tttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagttaaaagagagttaga |
39452944 |
T |
|
| Q |
301 |
cccactactatactccatcctataatctagcgcaatctccac |
342 |
Q |
| |
|
| ||| | || |||||| ||| ||||||| || ||||||||| |
|
|
| T |
39452945 |
ctcaccaataaactccaacctctaatctaacgtaatctccac |
39452986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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