View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_17 (Length: 367)
Name: NF19863_low_17
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_17 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 1308343 - 1307984
Alignment:
| Q |
1 |
cgttatgcttaaaggagtattatagaccacacctgtggtgatttcagccagccgtactactcttttgttgtatgtagaatttatgcttgatactggaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1308343 |
cgttatgcttaaaggagtattatagaccacacctgtggtgatttcagccagcagtactgctcttttgttgtatgtagaatttatgcttgatactggaatc |
1308244 |
T |
|
| Q |
101 |
ctaacagcgggttatatataataatgaattaatagagattgcattttaatatgcctggaagtatgttagatacctcctccgagcaatgctattgttaggt |
200 |
Q |
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| T |
1308243 |
ctaacagcgggttatatataataatgaattaatagagattgcattttaatatgcctggaagtatgttagatacctcctccgagcaatgctattgttaggt |
1308144 |
T |
|
| Q |
201 |
tcaaaatgtcgatttttgttaccagatatcgtaatgtctagaggcaattctgaatgatgtgcaagttgacgagatttcattttattgatttgtagtataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1308143 |
tcaaaatgtcgatttttgttaccagatatcgtaatgtctagaggcaattctgaatgatgtgcaagttgacgagatttcattttattgatttgtagtataa |
1308044 |
T |
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| Q |
301 |
tctttatagtttgtcttaattaatgaacaacacctatttcgtttagttggagtattatct |
360 |
Q |
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| T |
1308043 |
tctttatagtttgtcttaattaatgaacaacacccatttcgtttagttggagtattatct |
1307984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 258
Target Start/End: Complemental strand, 1287794 - 1287588
Alignment:
| Q |
58 |
tactcttttgttgtatgt--agaatttatgcttgatactggaatcctaacagcgggttatatata-ataatgaattaatagagattgcattttaatatgc |
154 |
Q |
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| T |
1287794 |
tactcttttgttgtatgtgtagaacttattcttgatattggaatcctgacaacgggttat-tatatattatgaatagataggtattgcattttaacatgc |
1287696 |
T |
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| Q |
155 |
ctggaagtatgttagatacctcctccgagc-aatgctattgttagg-ttcaaaatgtcgatttt--tgttaccagatatcgtaatgtctagaggcaattc |
250 |
Q |
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|||||||||||||| |||| |||| ||||| |||||||||| |||| |||||||||| | |||| |||||| |||||||||| |||| |||||||||| |
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| T |
1287695 |
ctggaagtatgttacatacatccttcgagcaaatgctattgctaggtttcaaaatgttggtttttatgttactagatatcgtaccgtcttgaggcaattc |
1287596 |
T |
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| Q |
251 |
tgaatgat |
258 |
Q |
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| T |
1287595 |
tgaatgat |
1287588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 14113 - 13855
Alignment:
| Q |
1 |
cgttatgcttaaaggagtattatagaccacacctgtggtgatttcagccagccgtactactcttttgttgtatgtagaatttatgcttgatactggaatc |
100 |
Q |
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|||||||||||||| |||||||||||||| ||| | |||||||||| | |||||||||||||| |||||||||| |||| ||||||| ||||||| |
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| T |
14113 |
cgttatgcttaaagaagtattatagaccatgactgcgctgatttcagctgg---tactactcttttgtcgtatgtagaacttattcttgatattggaatc |
14017 |
T |
|
| Q |
101 |
ctaacagcgggtta-tatataataatgaattaatagagattgcattttaatatgcctggaagtatgttagatacctcctccgagc-aatgctattgttag |
198 |
Q |
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|| ||| ||||||| ||||| || |||||| |||| |||||||||||| |||||||||||||||||| |||| |||| ||||| |||||||||| ||| |
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| T |
14016 |
ctgacaacgggttattatat-attatgaatagataggtattgcattttaacatgcctggaagtatgttacatacatccttcgagcaaatgctattgctag |
13918 |
T |
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| Q |
199 |
g-ttcaaaatgtcgatttt--tgttaccagatatcgtaatgtctagaggcaattctgaatgat |
258 |
Q |
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| T |
13917 |
gtttcaaaatgttggtttttatgttactagatatcgtaccgtcttgaggcaattctgaatgat |
13855 |
T |
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