View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_19 (Length: 323)
Name: NF19863_low_19
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32282254 - 32282144
Alignment:
| Q |
1 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttcaatatatgatctcaaatctagacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32282254 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagtatcacttctcatcaaagtctcactctctaccatcttcaatatatgatctcaaatctcgacat |
32282155 |
T |
|
| Q |
101 |
gtgacaatccc |
111 |
Q |
| |
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| |||||||| |
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| T |
32282154 |
gccacaatccc |
32282144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 32282039 - 32282006
Alignment:
| Q |
214 |
gaaattgtggagggacatttttggggaaatgagt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
32282039 |
gaaattgtggagggacatttttggggaaatgagt |
32282006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15701489 - 15701379
Alignment:
| Q |
1 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttcaatatatgatctcaaatctagacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15701489 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagtatcacttctcatcaaagtctcactctctaccatcttcaatatatgatctcaaatctcgacat |
15701390 |
T |
|
| Q |
101 |
gtgacaatccc |
111 |
Q |
| |
|
| |||||||| |
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|
| T |
15701389 |
gccacaatccc |
15701379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 15701274 - 15701241
Alignment:
| Q |
214 |
gaaattgtggagggacatttttggggaaatgagt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15701274 |
gaaattgtggagggacatttttggggaaatgagt |
15701241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12512927 - 12512853
Alignment:
| Q |
1 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagcatcacttctcatcaaaatctcactctctaccatcttc |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12512927 |
aagtgaaatacctgaagagggaaaaaacatgtcaaagcatcacttctcatcaaagtctcactctctaccatcttc |
12512853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 12512715 - 12512682
Alignment:
| Q |
214 |
gaaattgtggagggacatttttggggaaatgagt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12512715 |
gaaattgtggagggacatttttggggaaatgagt |
12512682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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