View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_2 (Length: 674)
Name: NF19863_low_2
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 15134127 - 15134397
Alignment:
| Q |
11 |
tcgaagaaaatctctctttgatgtgattgtgttcggtaaatgcggattagaaataaaataccctttaagagaaacttgtgatggttctttgaaagttacc |
110 |
Q |
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| T |
15134127 |
tcgaaaaaaatctctctttgatgtgattgtattcggtaaatgcggattagaaataaaataccctttaagagaaacttgtgatggttctttgaaagttacc |
15134226 |
T |
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| Q |
111 |
gaggatccttcatcatcgcctggtaaaaggctaaaatctccatcaccatgtgtgaaggtttgtaaaaagatgaaaatcaacccaaaggaacaaaaagaat |
210 |
Q |
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| T |
15134227 |
gaggatccttcatcatcgcctggtaaaaggcgaaaatctccatcaccatgtgtgaaggtttgtaagaagatgaaaatcaacccagaggaacaaaaagaat |
15134326 |
T |
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| Q |
211 |
ctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaagatatgaacaatggttag |
281 |
Q |
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| T |
15134327 |
ctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaggatatgaacaatggttag |
15134397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 374 - 661
Target Start/End: Original strand, 15134498 - 15134786
Alignment:
| Q |
374 |
gtggtgtagcaggtaatagtcgtgattatatcaaggagagaagcaaagttttgtacgagaaagtgaacgaaaaattcagccatgacaaggacttttttgc |
473 |
Q |
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| T |
15134498 |
gtggtgtagcaggtaatagtcgtgatgatatcaaggagaaaagcaaagttttgtacgagaaagtgaacgaaaaatttagccatgacaaggacttttttgc |
15134597 |
T |
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| Q |
474 |
atgtatgatcaagaagacacacattgagagagatcttttggtaacaaactattttatttgatcacatctagtaataattcatt--aaaaatatagacgtg |
571 |
Q |
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| T |
15134598 |
atgtatgatcaagaagacacacattgagagagatcttttggtaacaaactattttatttgatcacatctagtaataattcattaaaaaaatatagacgtg |
15134697 |
T |
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| Q |
572 |
aatattatcaannnnnnnatctattttaaaatgaaattatttattatgtactgacagtgtagttattatatacttggacgggtaaaaact |
661 |
Q |
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| T |
15134698 |
aatattatcga-tttattatccattttaaaatgaaattatttattatgtactgacagtgtaattattatatacttggaccggtaaaaact |
15134786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 279
Target Start/End: Original strand, 12866975 - 12867159
Alignment:
| Q |
95 |
ttctttgaaagttaccgaggatccttcatcatcgcctggtaaaaggctaaaatctccatcaccatgtg-tgaaggtttgtaaaaagatgaaaatcaaccc |
193 |
Q |
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| T |
12866975 |
ttctttgaaaattattaaggatccttcatcacggcgaggtaaaaggccaaaatcttcatcaccgtcttctggag-tttctaagaagatgaaaaacaatcc |
12867073 |
T |
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| Q |
194 |
aaaggaacaaaaagaatctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaagatatgaacaatggtt |
279 |
Q |
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| | |||||||||||||||||||||||||||| || | ||||| | || |||| ||||||||||||||| ||| || ||||||||| |
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| T |
12867074 |
agaagaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcataattttaaggatgtggacaatggtt |
12867159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 12966190 - 12966106
Alignment:
| Q |
132 |
ggtaaaaggctaaaatctccatcaccatgtgtgaaggtttgtaaaaagatgaaaatcaacccaaaggaacaaaaagaatctaagc |
216 |
Q |
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| T |
12966190 |
ggtaaaaggctaaaatctccagcaccatctatggaagtttgtaagaagatgaaaatcaactcaaaagaacaaaaagattctaagc |
12966106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 12866874 - 12866939
Alignment:
| Q |
21 |
tctctctttgatgtgattgtgttcggtaaatgcggattagaaataaaataccctttaagagaaact |
86 |
Q |
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| T |
12866874 |
tctctctttaatgtgatagtacttggtaaatgcggattagaaataaaataccctttaaaagaaact |
12866939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 12966315 - 12966254
Alignment:
| Q |
25 |
tctttgatgtgattgtgttcggtaaatgcggattagaaataaaataccctttaagagaaact |
86 |
Q |
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| T |
12966315 |
tctttaatgtgattgtattcggtagatgcggattagaaataaaatacccgtcaagagaaact |
12966254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 12965905 - 12965836
Alignment:
| Q |
463 |
gacttttttgcatgtatgatcaagaagacacacattgagagagatcttttggtaacaaactattttattt |
532 |
Q |
| |
|
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| T |
12965905 |
gacttttttgcatgtatgatgctaaagacatacattgatagagatctcttggtaataaactattttattt |
12965836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Original strand, 12867387 - 12867436
Alignment:
| Q |
489 |
gacacacattgagagagatcttttggtaacaaactattttatttgatcac |
538 |
Q |
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| T |
12867387 |
gacatacattaaaagagatcttatggtaacaaaatattttatttgatcac |
12867436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 49742752 - 49742807
Alignment:
| Q |
31 |
atgtgattgtgttcggtaaatgcggattagaaataaaataccctttaagagaaact |
86 |
Q |
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| T |
49742752 |
atgtgattgtatgcggtaaatgcggattagaaataaaatatcctttaaaagaaact |
49742807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 49742912 - 49742964
Alignment:
| Q |
173 |
taaaaagatgaaaatcaacccaaaggaacaaaaagaatctaagcatgagaaga |
225 |
Q |
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| T |
49742912 |
taaaaagatgaaaatcaattcaaaagaacaaaaagaacctaagcatgagaaga |
49742964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 49743156 - 49743190
Alignment:
| Q |
406 |
aaggagagaagcaaagttttgtacgagaaagtgaa |
440 |
Q |
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| T |
49743156 |
aaggagagaagcaaagttttgtacgacaaagtgaa |
49743190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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