View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_21 (Length: 308)
Name: NF19863_low_21
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 95 - 294
Target Start/End: Complemental strand, 31528232 - 31528033
Alignment:
| Q |
95 |
atactcttaaccagaacttaactaattttgacggtgaataaacatttgtttcctagtattttatttgtattcttatgactttttattatacaggtttcaa |
194 |
Q |
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| T |
31528232 |
atactcttaaccagaacttaactaattttgacggtgaataaacatttgtttcctagtattttatttgtattcttatgactttttattatacaggtttcaa |
31528133 |
T |
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| Q |
195 |
ggaaacaaacaaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattt |
294 |
Q |
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| T |
31528132 |
ggaaacaaacaaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattt |
31528033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 31497402 - 31497283
Alignment:
| Q |
175 |
ttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacctgtgtgtgatg |
274 |
Q |
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| T |
31497402 |
ttttattatacaggtttcaaggaaacaaacaaagggtgttgtggaactggcacatttgaagtaactccattgtgtaatgaactcacacctgtatgtgatg |
31497303 |
T |
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| Q |
275 |
atgcttcaaaatatgtattt |
294 |
Q |
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| T |
31497302 |
acgcttcaaaatatgtattt |
31497283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 40845724 - 40845566
Alignment:
| Q |
138 |
atttgtttccta--gtattttatttgtattcttatgactttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaag |
235 |
Q |
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| T |
40845724 |
atttgtttcctatagtatttattttgtatttttttgagtttttattatacaggtttcaaggaaacaaacaaaggatattgcggaactggcacatttgaag |
40845625 |
T |
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| Q |
236 |
taactccattgtgtaatgagctcacacctgtgtgtgatgatgcttcaaaatatgtattt |
294 |
Q |
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| T |
40845624 |
taactccattgtgcaatgaactcacacctgtatgtgatgacgcttctaaatatgtattt |
40845566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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