View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_26 (Length: 281)

Name: NF19863_low_26
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_low_26
NF19863_low_26
[»] chr1 (4 HSPs)
chr1 (63-209)||(18431611-18431755)
chr1 (73-215)||(22788364-22788508)
chr1 (215-267)||(30773051-30773103)
chr1 (116-197)||(6154604-6154683)
[»] chr2 (1 HSPs)
chr2 (63-214)||(16916344-16916491)
[»] chr6 (2 HSPs)
chr6 (70-209)||(5014070-5014213)
chr6 (73-198)||(16692978-16693108)
[»] chr7 (2 HSPs)
chr7 (63-208)||(46437312-46437453)
chr7 (132-198)||(38663019-38663084)
[»] chr5 (4 HSPs)
chr5 (63-209)||(424736-424876)
chr5 (70-209)||(18113738-18113878)
chr5 (163-198)||(25634440-25634475)
chr5 (71-108)||(17074657-17074694)
[»] chr3 (3 HSPs)
chr3 (73-217)||(26555473-26555615)
chr3 (73-128)||(52118379-52118434)
chr3 (162-198)||(2125280-2125316)
[»] chr8 (2 HSPs)
chr8 (73-127)||(28535248-28535302)
chr8 (163-216)||(28535191-28535244)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 18431611 - 18431755
Alignment:
Q  63 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 162  Q
    ||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||    
T  18431611 acaatacgttttgttttgtttgtgttgtgtgtgtttttcaatttccactttccttcccgtaccttatgtttatgcatataaaa--aattaaaattaggct 18431708  T
Q  163 agaatttgttgtggcagctgccacaccatgtttcactctacatccgc 209  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||    
T  18431709 agaatctggtgtggcagctgccacaccatgtttcactctacatccgc 18431755  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 22788364 - 22788508
Alignment:
Q  73 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataa--taataattaggctagaatttg 170  Q
    |||||||| |||| | |||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||   || |||||||| ||||| ||    
T  22788364 ttgttttgtttgtatggtgtgtgttttccaatttccactttccttcccttgccatatgtttatacatataaaaaaaaataaaaaattaggcaagaatctg 22788463  T
Q  171 ttgtggcagctgccacaccatgtttcactctacatccgctcctga 215  Q
     |||||||| |||||||||||||||||| || ||||||| |||||    
T  22788464 gtgtggcagttgccacaccatgtttcacactccatccgcccctga 22788508  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 30773103 - 30773051
Alignment:
Q  215 attaccatgttagatacctattaagtttttgtgttataattatagtaaatagt 267  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30773103 attaccatgttagataccgattaattttttgtgttataattatagtaaatagt 30773051  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 6154604 - 6154683
Alignment:
Q  116 ttcccgtgccttatgtt--tatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttca 197  Q
    |||||||||||||||||  |||||||||||||  ||    |||||||||||||| || ||| ||||||| ||||||||||||||    
T  6154604 ttcccgtgccttatgttattatgcatataaaacaaa----aattaggctagaatctggtgttgcagctgtcacaccatgtttca 6154683  T

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Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 16916344 - 16916491
Alignment:
Q  63 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 162  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||    
T  16916344 acaatgtgttttgttttgtttgtattgtgtatattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaa----aaaaattaggct 16916439  T
Q  163 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctg 214  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  16916440 agaatctggtgtggcagctgacacaccatgtttcactctacatccgcccctg 16916491  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 5014070 - 5014213
Alignment:
Q  70 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataat----aattaggctaga 165  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||     ||||||| ||||    
T  5014070 gttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttcccatgccttatgtttatgcatataaaaaaaaaaaacaaaaattaggttaga 5014169  T
Q  166 atttgttgtggcagctgccacaccatgtttcactctacatccgc 209  Q
    || || ||||||||||||||||||||||||||||||||||||||    
T  5014170 atctggtgtggcagctgccacaccatgtttcactctacatccgc 5014213  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 16693108 - 16692978
Alignment:
Q  73 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaa-----aataataataattaggctagaat 167  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||     || || || |||||||| |||||    
T  16693108 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgccttatgtttatgcatataaacaaaaaaaaaaaaaaattaggcaagaat 16693009  T
Q  168 ttgttgtggcagctgccacaccatgtttcac 198  Q
     || |||||||||| ||||||||||||||||    
T  16693008 ctggtgtggcagctaccacaccatgtttcac 16692978  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 46437453 - 46437312
Alignment:
Q  63 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 162  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    || ||||||| |    
T  46437453 acaacgcgttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttctcgtgccttatgtttatgcatataaaaa----aaaaattaggtt 46437358  T
Q  163 agaatttgttgtggcagctgccacaccatgtttcactctacatccg 208  Q
    | ||| |  |||||||||||||||||||||||||||||||||||||    
T  46437357 ataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 38663084 - 38663019
Alignment:
Q  132 ttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcac 198  Q
    ||||||||||||||| || || ||| ||  |||||| || |||||||||||||||||||||||||||    
T  38663084 ttatgcatataaaaaaaaaaaaaat-agattagaatctggtgtggcagctgccacaccatgtttcac 38663019  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 424736 - 424876
Alignment:
Q  63 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtt--tatgcatataaaaataataataattagg 160  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    | |||||||||||  |||||||||||||  ||    |||||||    
T  424736 acaacgcgttttgttttgtttgtgttgtgtgtcttttccaatttccactttcc----cctgccttatgttattatgcatataaaacaaa----aattagg 424827  T
Q  161 ctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 209  Q
    ||||||| || |||||||||||||||||||||||||| | |||||||||    
T  424828 ctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgc 424876  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 18113738 - 18113878
Alignment:
Q  70 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgt--ttatgcatat--aaaaataataat-aattaggctag 164  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    ||||| || |||||||  |||   ||||  ||||| |||||| ||| |||||||    
T  18113738 gttttgttttgtttgtgttgtgtgtgtttttcaatttccact----ttcccatgtcttatgttattaaaaatataaaaaaaaaataataaataaggctag 18113833  T
Q  165 aatttgttgtggcagctgccacaccatgtttcactctacatccgc 209  Q
    ||| || ||||||| |||||||||||||||||| | |||||||||    
T  18113834 aatctggtgtggcaactgccacaccatgtttcaatgtacatccgc 18113878  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 25634440 - 25634475
Alignment:
Q  163 agaatttgttgtggcagctgccacaccatgtttcac 198  Q
    |||||||| |||||||||||||||||||||||||||    
T  25634440 agaatttggtgtggcagctgccacaccatgtttcac 25634475  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 17074694 - 17074657
Alignment:
Q  71 ttttgttttgattgtgttgtgtgtattttccaatttcc 108  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  17074694 ttttgttttggttgtgttgtgtgtattttccactttcc 17074657  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 26555615 - 26555473
Alignment:
Q  73 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataat---aataattaggctagaattt 169  Q
    |||||||| |||||| |||| | |||||||||||||||||||||||||     ||||||||||||||||||||| ||    || || ||||| ||||| |    
T  26555615 ttgttttgtttgtgtggtgtttgttttccaatttccactttccttccc-----ttatgtttatgcatataaaaaaaaataaaaaaaataggcaagaatct 26555521  T
Q  170 gttgtggcagctgccacaccatgtttcactctacatccgctcctgatt 217  Q
    | ||||||||||||||||||||||||||| || ||||||| |||||||    
T  26555520 ggtgtggcagctgccacaccatgtttcacactccatccgcccctgatt 26555473  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 52118434 - 52118379
Alignment:
Q  73 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctta 128  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  52118434 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctta 52118379  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 2125316 - 2125280
Alignment:
Q  162 tagaatttgttgtggcagctgccacaccatgtttcac 198  Q
    |||||| || |||||||||||||||||||||||||||    
T  2125316 tagaatctggtgtggcagctgccacaccatgtttcac 2125280  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 28535302 - 28535248
Alignment:
Q  73 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctt 127  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  28535302 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctt 28535248  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 28535244 - 28535191
Alignment:
Q  163 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctgat 216  Q
    ||||| || ||||||||||||||||||||||||||| || ||||||| ||||||    
T  28535244 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgat 28535191  T

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