View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_28 (Length: 268)

Name: NF19863_low_28
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_low_28
NF19863_low_28
[»] chr6 (11 HSPs)
chr6 (18-253)||(6497693-6497928)
chr6 (18-253)||(6460744-6460979)
chr6 (22-170)||(6519576-6519724)
chr6 (19-175)||(6506507-6506663)
chr6 (22-170)||(6529223-6529371)
chr6 (22-175)||(6472041-6472194)
chr6 (22-175)||(6466357-6466510)
chr6 (19-176)||(6515089-6515246)
chr6 (43-131)||(7204154-7204242)
chr6 (43-131)||(7238905-7238993)
chr6 (46-128)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (22-164)||(9664312-9664454)
chr7 (46-175)||(3752829-3752958)
chr7 (19-128)||(4047253-4047362)
[»] chr4 (1 HSPs)
chr4 (22-164)||(13535336-13535478)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 6497693 - 6497928
Alignment:
Q  18 atatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497693 atatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagag 6497792  T
Q  118 tttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttggatctgtcattggaaaaggagagctca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6497793 tttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttgaatctgtcattggaaaaggagagctca 6497892  T
Q  218 ttttgttgttgatagtaaatatctatttttggtgat 253  Q
    |||||||||||||||||||| |||||||||||||||    
T  6497893 ttttgttgttgatagtaaatctctatttttggtgat 6497928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6460979 - 6460744
Alignment:
Q  18 atatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagag 117  Q
    |||||| |||||||| |||||||  || ||| ||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||| |||    
T  6460979 atatgagacagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggag 6460880  T
Q  118 tttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttggatctgtcattggaaaaggagagctca 217  Q
    ||||| ||||| ||||| ||||||||||||  ||||||||||||||||||||| ||||  | ||| |||||||||||| |||||||||||||||||||||    
T  6460879 tttgtagggagtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtggaacttggatctatcattggaaaaggagagctca 6460780  T
Q  218 ttttgttgttgatagtaaatatctatttttggtgat 253  Q
    |||||||||||||||||||| |||||||||||||||    
T  6460779 ttttgttgttgatagtaaatctctatttttggtgat 6460744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 6519724 - 6519576
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6519724 gaaacagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttg 6519625  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttggaggggtc 170  Q
    | ||||||||||| ||||| | ||||  |||||||||||||||||||||    
T  6519624 tagggaggggtttggatagtaaatttggagagaagaatttggaggggtc 6519576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 6506507 - 6506663
Alignment:
Q  19 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||   ||||| |||||||||||||||||||||||||||||||    
T  6506507 tatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagt 6506606  T
Q  119 ttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 175  Q
    |||| || |||||| | ||||||||||||  ||||||||||||||||||||| ||||    
T  6506607 ttgtaggcaggggtgtggatagcagatttggagagaagaatttggaggggtcaggga 6506663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 6529223 - 6529371
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    |||| |||||||||||||||||| ||||||||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6529223 gaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagtttg 6529322  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttggaggggtc 170  Q
    | ||||||||| | ||||||||||||  |||||||||||||||||||||    
T  6529323 tagggaggggtgtggatagcagatttggagagaagaatttggaggggtc 6529371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 6472194 - 6472041
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || || || |||| ||||||||||||||||||||    
T  6472194 gaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttg 6472095  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 175  Q
    | ||||||||| | ||||||| ||||   |||||||||||||||||||| ||||    
T  6472094 tagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggga 6472041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 6466357 - 6466510
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    |||| |||||||||||||| ||| ||||||||||| || |||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  6466357 gaaagagaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttg 6466456  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 175  Q
    ||||||||||| | ||||||||||||  ||||||||| || | |||||| ||||    
T  6466457 tggggaggggtgtggatagcagatttggagagaagaagtttgtggggtcaggga 6466510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 6515246 - 6515089
Alignment:
Q  19 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 118  Q
    ||||||| |||||||||||||| || |||| |||||||||||||||| |  |||||||||   ||||| |   |||||  ||||||||||||||||||||    
T  6515246 tatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaaagagt 6515147  T
Q  119 ttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggat 176  Q
    |||||||||||||| ||||||| ||||||   |||||||| |||||||| || |||||    
T  6515146 ttgtggggaggggtgtagatagaagatttggggagaagaacttggagggatcagggat 6515089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 7204242 - 7204154
Alignment:
Q  43 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 131  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7204242 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7204154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 7238993 - 7238905
Alignment:
Q  43 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 131  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7238993 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7238905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  46 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggag 128  Q
    ||||||||||||||||| ||||  || ||||||  |||||| || |  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 9664454 - 9664312
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||||||||||||||    
T  9664454 gaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttg 9664355  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttgga 164  Q
    | ||||||||| ||||||| ||||||  ||||||||| |||||    
T  9664354 tagggaggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 3752958 - 3752829
Alignment:
Q  46 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagat 145  Q
    ||||||||||||||||| ||||  |||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  146 ttttagagaagaatttggaggggtctggga 175  Q
    |||  |||||||| || || |||| |||||    
T  3752858 tttgtgagaagaagtttgaagggtttggga 3752829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 4047253 - 4047362
Alignment:
Q  19 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 118  Q
    ||||||||||| || || |||| ||| |||||||  |||||||| ||||  |||||| |||| ||||| || |  |||||||| ||||||||||| ||||    
T  4047253 tatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagt 4047352  T
Q  119 ttgtggggag 128  Q
    |||| |||||    
T  4047353 ttgtagggag 4047362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 13535478 - 13535336
Alignment:
Q  22 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 121  Q
    |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||||||||||||||    
T  13535478 gaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttg 13535379  T
Q  122 tggggaggggtttagatagcagatttttagagaagaatttgga 164  Q
    | ||||||||| ||||||| ||||||  ||||||||| |||||    
T  13535378 tagggaggggtgtagatagaagatttggagagaagaaattgga 13535336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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