View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_3 (Length: 659)
Name: NF19863_low_3
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 26859727 - 26859911
Alignment:
| Q |
99 |
tatcctttattacttgatttccatcacaatgaagtcatttgttcttcttctttccatttcttaaagatgtgggcgtctcactttgattttgttgtgttga |
198 |
Q |
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| T |
26859727 |
tatcctttattacttgatttccaacacaatgaaatcaaatatgtttcctcttttcattacttaaatatgtgggcgtctcacaatga-----ttgtattaa |
26859821 |
T |
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| Q |
199 |
tgttgtgacagattcttggaacactaatatcgttggttttccaatgtttattttaacacaaaagctgaatctccttaagaacaatttgaa |
288 |
Q |
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| T |
26859822 |
tgttgtgaaagattcttagaacactaatattgttggtcgtcggatgtttatttgaacagaaaatctgaagttacttaagaataatttgaa |
26859911 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 639
Target Start/End: Original strand, 20004551 - 20004614
Alignment:
| Q |
579 |
caacatgcgactgcactgctgtcaac---tctgcaactcgcaagttttcttcgcggtttaggct |
639 |
Q |
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| T |
20004551 |
caacacgcaactgcactgctgtcaacaactctgcaactcgcaagttttcttcgcggttcaggct |
20004614 |
T |
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