View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_31 (Length: 261)
Name: NF19863_low_31
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 9701908 - 9701680
Alignment:
| Q |
16 |
atataaacaataaataaagcagtaatgcttatggttccctaacaaaaatataaacaaactcatagataattgttcataaaaataccatgaactcatatca |
115 |
Q |
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| T |
9701908 |
atataatcaataaataaagcagtaatgcttatggttcc-tgacaaaaatataaacaaactcatagataattgttcataaaaataccatgaactctt--ca |
9701812 |
T |
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| Q |
116 |
nnnnnnngttaatcgccagaaaataactaaagcaaactatttcctcgacatcgctatcggacatgctcccaatcaaatatcatgcataaacaagaacaaa |
215 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9701811 |
attttttgttaatcgctagcaaataactaaagcaaactatttcctcgacatcgctttcggacatgctcccgatcaaatatcatgcataaacaagaacaaa |
9701712 |
T |
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| Q |
216 |
atttggaggcaatgagagaaggtgtcaatatt |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9701711 |
atttggaggcaatgagagaaggtgtcaatatt |
9701680 |
T |
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