View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_36 (Length: 250)
Name: NF19863_low_36
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 37001844 - 37001967
Alignment:
| Q |
9 |
gaagaatatccataaaagcatactcaaagaggtaaattaaggaaagaagcatccaatatgagatcaaatccttagttttcgcactggaatcagtctcgat |
108 |
Q |
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| T |
37001844 |
gaagaaaatccataaaagcatactcaaagaggtaaattaaggaaagaagcatccaatatgagatcaaatccttagttttcgcactggaatcagtctcgat |
37001943 |
T |
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| Q |
109 |
tgcttgtatggaagcacacctgtc |
132 |
Q |
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| T |
37001944 |
tgcttgtatggaagcacacctgtc |
37001967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 36982497 - 36982610
Alignment:
| Q |
19 |
cataaaagcatactcaaagaggtaaattaaggaaagaagcatccaatatgagatcaaatccttagttttcgcactggaatcagtctcgattgcttgtatg |
118 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||| || |||||||||| | |
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| T |
36982497 |
cataaaagcatattcaaagaggtaaattaaggagagaagtatccaatatgagatcaaatccttagtttctgcataggagtcagtttcaattgcttgtacg |
36982596 |
T |
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| Q |
119 |
gaagcacacctgtc |
132 |
Q |
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| T |
36982597 |
gaagcacacctgtc |
36982610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 36997957 - 36998070
Alignment:
| Q |
19 |
cataaaagcatactcaaagaggtaaattaaggaaagaagcatccaatatgagatcaaatccttagttttcgcactggaatcagtctcgattgcttgtatg |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||| |
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| T |
36997957 |
cataaaagcatactcaaagaggtaaattaatgaaagaagtatccaatatgagatcaaatccgtagtttctgcataggaatcagtctcgattgctagtaca |
36998056 |
T |
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| Q |
119 |
gaagcacacctgtc |
132 |
Q |
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| T |
36998057 |
gaagcaaacctgtc |
36998070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 36988965 - 36989077
Alignment:
| Q |
19 |
cataaaagcatactcaaagaggtaaattaaggaaagaagcatccaatatgagatcaaatccttagttttcgcactggaatcagtctcgattgcttgtatg |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||||||| | || |||| ||| ||| ||||| |||||||| ||||||||| |
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| T |
36988965 |
cataaaagcatactcaaataggtaaattaatgaaagaagtatccaatatgagattatattcttaatttctgcatcagaatcggtctcgatagcttgtatg |
36989064 |
T |
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| Q |
119 |
gaagcacacctgt |
131 |
Q |
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||||||||||||| |
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| T |
36989065 |
gaagcacacctgt |
36989077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 37002048 - 37002085
Alignment:
| Q |
213 |
tttcaatacaccaaacactaagagcaagaacttacata |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37002048 |
tttcaatacaccaaacactaagagcaagaacttacata |
37002085 |
T |
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