View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_4 (Length: 646)
Name: NF19863_low_4
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 44366468 - 44367036
Alignment:
| Q |
1 |
acttataaaataaaaa--ttgagtttggacttgtgtggcacttgctacacccggccttgtttaggtccgtcctcgatcgtggccacttaatcttttgaga |
98 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44366468 |
acttataaaataaaaaaattgagtttggacttgtgtggcacttgctacacccggccttgtttaggtccgtcctcgatcgtggccacctaatcttttgaga |
44366567 |
T |
|
| Q |
99 |
ctctgatattgcacaaaccatgagtttgaagaccacatcatcacaattcacgacaagttattatacaaataacgtggagtttgattttataaataattgt |
198 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44366568 |
ctctgatattgcacaaaccataagtttgaagaccacatca---caattcacgacaagttattatacaaataacgtggagtttaattttataaataattgt |
44366664 |
T |
|
| Q |
199 |
tttgttttaatacaagtgttgtttttataccaaaaattgttcaaaaatactaacttttaattttcaatcnnnnnnnnnnnnccttccaattatactaatt |
298 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44366665 |
tttgttttaatacatgtgttgcttttataccaaaaattgttcaaaaatactaacttttaattttcaatctttttttttt---cttccaattatactaatt |
44366761 |
T |
|
| Q |
299 |
acnnnnnnnnccct-ccaattatactaataattaatattacatgcattatgctagagcgaatatcctttcaccaatacttttttcagactaagaagtagt |
397 |
Q |
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|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44366762 |
acttttttttctcttccaattatactaataattaatattacatgcattatgctagagcgaatatcctttcaccaatacttttttcagactaagaagtagt |
44366861 |
T |
|
| Q |
398 |
acaccaatccttggatttca-ccaccaaaattttactactaccctaattcatacaaaggtactgttaggcactatgaataagaaaattaattataagtaa |
496 |
Q |
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||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44366862 |
acaccaatccttgaattgaaaccaccaaaattttactactaccctaatacatacaaaggtactgttaggcactatgaataaggaaattaattataagtaa |
44366961 |
T |
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| Q |
497 |
agcggtagaagtcaaagaatttcaaaagggatatgctgaactttgatcttagcaaaattgaaaagaaaaagacaa |
571 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44366962 |
agcagtagaagtcaaagaatttcaaaagggatatgctgaactttgatcttagccaaattgaaaagaaaaagacaa |
44367036 |
T |
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