View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_41 (Length: 238)
Name: NF19863_low_41
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_41 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 101436 - 101503
Alignment:
| Q |
66 |
agaaaataatagaacttggcatcatttcatgaaaatttctatttattccgatggatacaacttttcaa |
133 |
Q |
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| T |
101436 |
agaaaataataaaacttggcatcatttcatgaaaatttctatttattccaatggatacaacttttcaa |
101503 |
T |
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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 6617765 - 6617834
Alignment:
| Q |
67 |
gaaaataatagaacttggcatcatttcatgaaaatttctatttattccgatggatacaacttttcaacta |
136 |
Q |
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| T |
6617765 |
gaaaataattaaagttggcatcatttcatgaaaatttctatttattccaatggacacaacttttcaacta |
6617834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 22706287 - 22706219
Alignment:
| Q |
68 |
aaaataatagaacttggcatcatttcatgaaaatttctatttattccgatggatacaacttttcaacta |
136 |
Q |
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| T |
22706287 |
aaaataataaaagttgtcaccatttcaagacaacttctatttattccaatcgacacaacttttcaacta |
22706219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 15155222 - 15155155
Alignment:
| Q |
68 |
aaaataatagaacttggcatcatttcatgaaaatttctatttattccgatggatacaacttttcaact |
135 |
Q |
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||||||||| || || ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15155222 |
aaaataataaaagtttgcaccatttcatgaaaatttctatttattccaatggatacaacttttcaact |
15155155 |
T |
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