View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_44 (Length: 235)
Name: NF19863_low_44
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_44 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4441865 - 4442100
Alignment:
| Q |
1 |
ttagttatttgaagtttgcttcatcatttatatagagtaagttagtaactaactaacgaaaaattatatctttactaatcatgatttctttatagataga |
100 |
Q |
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|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
4441865 |
ttagttatttgatgtttgctttatcatatatatagagtaagttagtaactaactaacgaaaagttatatctctactaatcatgatttctttatagatata |
4441964 |
T |
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| Q |
101 |
tat--agttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttc |
198 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441965 |
tatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttc |
4442064 |
T |
|
| Q |
199 |
atttagagctcattcttccctggtttaactccaatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4442065 |
atttagagctcattcttccctggtttaactccaatt |
4442100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 32849402 - 32849272
Alignment:
| Q |
96 |
atagatatagttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttg |
194 |
Q |
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||||||||||||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| |
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| T |
32849402 |
atagatatagttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttg |
32849303 |
T |
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| Q |
195 |
cttcatttagagctcattcttccctggttta |
225 |
Q |
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| T |
32849302 |
gttcgcctagagctcattcttccctggttta |
32849272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 17478260 - 17478404
Alignment:
| Q |
91 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
190 |
Q |
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|||||||||||||| ||||||||||||| || ||| | || || |||||||||||||||||||||| | ||||| ||||||||||||||| ||| |
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| T |
17478260 |
tatagatagatatatttttgtactaattagtagttggtgtcttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcacta |
17478359 |
T |
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| Q |
191 |
tttgcttcatttagagctcattcttccctggtttaactccaattc |
235 |
Q |
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| T |
17478360 |
tttgatacgtctagagctcattcttctctggtttaactccaattc |
17478404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 8382789 - 8382645
Alignment:
| Q |
91 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
190 |
Q |
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|||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| || | |
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| T |
8382789 |
tatagatatatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaa |
8382690 |
T |
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| Q |
191 |
tttgcttcatttagagctcattcttccctggtttaactccaattc |
235 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
8382689 |
tttgcttcatttagatctcactcttccctggtttagctccaattc |
8382645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 8366778 - 8366642
Alignment:
| Q |
99 |
gatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttc |
198 |
Q |
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||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |
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| T |
8366778 |
gatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttc |
8366679 |
T |
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| Q |
199 |
atttagagctcattcttccctggtttaactccaattc |
235 |
Q |
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||||||| ||||||||||||||||| |||||||||| |
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| T |
8366678 |
atttagatatcattcttccctggtttgactccaattc |
8366642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 8341314 - 8341457
Alignment:
| Q |
92 |
atagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctat |
191 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||| |||||||| | ||| | ||||||||||||||| ||| |
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| T |
8341314 |
atagatagatatagttttgtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatat |
8341413 |
T |
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| Q |
192 |
ttgcttcatttagagctcattcttccctggtttaactccaattc |
235 |
Q |
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||| ||| | |||||| ||||| ||||||||||||| ||||| |
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| T |
8341414 |
ttgattcgccttgagctcgttctttcctggtttaactcaaattc |
8341457 |
T |
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