View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_49 (Length: 215)

Name: NF19863_low_49

Description: NF19863

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19863_low_49

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 180; E-Value: 2e-97

Query Start/End: Original strand, 1 - 200

Target Start/End: Complemental strand, 8522147 - 8521948

Alignment:

Q	1	tcatgtatatgttagtgtataaaatataattcaaatttatacgacccttttacctttgttattctgttttggcttatttggtgcatagttggtacaaaat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	8522147	tcatgtatatgttagtgtataaaatataattcaaatttatatgacctttttaactttgttattctgttttggcttatttggtgcataattggtacaaaat	8522048	T

Q	101	tgtgttttacaaaaggtatccaatccaataaatacaaactcttgttctttttaaacacattctttagaaagcaataaaaaatagacatgataagtgtgat	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8522047	tgtgttttacaaaaggtatccaatccaataaatacaaactcttgttctttttaaacacattctttagaaaacaataaaaaatagacatgataagtgtgat	8521948	T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 26 - 117

Target Start/End: Complemental strand, 42116084 - 42115994

Alignment:

Q	26	ataattcaaatttatacgacccttttacctttgttattctgttttggcttatttggtgcatagttggtacaaaattgtgttttacaaaaggt	117	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	42116084	ataattcacatttatatgacccttttacctttgcaattctgttttggctttttttgtttgta-ttgttacagaattgtgttttagaaaaggt	42115994	T

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