View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19863_low_8 (Length: 446)

Name: NF19863_low_8
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19863_low_8
NF19863_low_8
[»] chr3 (2 HSPs)
chr3 (184-432)||(9701680-9701925)
chr3 (44-103)||(9701962-9702021)
[»] chr8 (1 HSPs)
chr8 (22-109)||(37952781-37952868)
[»] chr2 (2 HSPs)
chr2 (27-109)||(35608469-35608551)
chr2 (58-109)||(42926481-42926532)
[»] chr6 (2 HSPs)
chr6 (22-106)||(6956223-6956307)
chr6 (38-109)||(23059360-23059431)
[»] chr5 (2 HSPs)
chr5 (22-107)||(28739843-28739927)
chr5 (38-112)||(14830267-14830341)
[»] chr7 (1 HSPs)
chr7 (22-109)||(21976290-21976378)
[»] chr1 (2 HSPs)
chr1 (22-109)||(48975900-48975982)
chr1 (22-72)||(23999181-23999231)
[»] chr4 (1 HSPs)
chr4 (38-108)||(18923133-18923203)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 184 - 432
Target Start/End: Complemental strand, 9701925 - 9701680
Alignment:
Q  184 atggttctctgaccaaaatataaacaataaataaagcagtaatgcttatggttccctaacaaaaatataaacaaactcatagataattgttcataaaaat 283  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  9701925 atggttctctaaccaaaatataatcaataaataaagcagtaatgcttatggttcc-tgacaaaaatataaacaaactcatagataattgttcataaaaat 9701827  T
Q  284 accatgaactcatatcannnnnnngttaatcgccagaaaataactaaagcaaactatttcctcgacatcgctatcggacatgctcccaatcaaatatcat 383  Q
    ||||||||||| |  ||       ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  9701826 accatgaactctt--caattttttgttaatcgctagcaaataactaaagcaaactatttcctcgacatcgctttcggacatgctcccgatcaaatatcat 9701729  T
Q  384 gcataaacaagaacaaaatttggaggcaatgagagaaggtgtcaatatt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9701728 gcataaacaagaacaaaatttggaggcaatgagagaaggtgtcaatatt 9701680  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 9702021 - 9701962
Alignment:
Q  44 ataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcat 103  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  9702021 ataaaagaaagaggatggaagggtcgaacccgcaacctacgcaagaaaaacaaacatcat 9701962  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 37952868 - 37952781
Alignment:
Q  22 atagtaaaaatataacaaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  37952868 atagtaaaaatataacagaaatataaaagaaagaggatggaagggtcgaacccgcgacctactcaagaaaagcaaacatcatttccac 37952781  T

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Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 35608469 - 35608551
Alignment:
Q  27 aaaaatataacaaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  35608469 aaaaatataacataaatataaaagaaagaggatggaagggtcgaacccgcaacctacgcaagaaaaacaaacatcatttccac 35608551  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 42926532 - 42926481
Alignment:
Q  58 atggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    ||||| ||||||||||| | |||||||||||| ||||||||| |||||||||    
T  42926532 atggaggggtcgaacccgcaacctacgcaagagaaacaaacaacatttccac 42926481  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 6956307 - 6956223
Alignment:
Q  22 atagtaaaaatataacaaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttc 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| ||| |||||||    
T  6956307 atagtaaaaatataacaaaaatataaaagaaagaggatgggagggtcaaacccgcgacctacacaagaaaaactaacgtcatttc 6956223  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 23059360 - 23059431
Alignment:
Q  38 aaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    |||||||||| |||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  23059360 aaaaatataatagaaagaggatggaagggtcgaacccgcagtctacgcaagaaaaacaaacatcatttccac 23059431  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 28739843 - 28739927
Alignment:
Q  22 atagtaaaaatataacaaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttcc 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| | | | ||||||| || |||||||||||||||||||||    
T  28739843 atagtaaaaatataacagaaatataaaagaaagaggatggaagggtc-atctcgcgacctatgcgagaaaaacaaacatcatttcc 28739927  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 14830267 - 14830341
Alignment:
Q  38 aaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccaccgc 112  Q
    |||||||||| |||||||||||||||||||| ||| | ||||||| ||||||||||||| |||||||||||||||    
T  14830267 aaaaatataacagaaagaggatggaagggtcaaactcgcgacctatgcaagaaaaacaagcatcatttccaccgc 14830341  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 21976378 - 21976290
Alignment:
Q  22 atagtaaaaatataacaaaaatat-aaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||| ||||| |||||||| |||||||||| ||||||| ||||||    
T  21976378 atagtaaaaatataacagaaatataaaaagaaagaagatgggagggtcaaacccgcgacctacacaagaaaaactaacatcacttccac 21976290  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 48975900 - 48975982
Alignment:
Q  22 atagtaaaaatataacaaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttccac 109  Q
    ||||||||||||||||| |||||||||     ||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||    
T  48975900 atagtaaaaatataacataaatataaa-----gaggatggaagagtcgaacccgcgacctacgcaagaaaaacaaaaatcaattccac 48975982  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 23999231 - 23999181
Alignment:
Q  22 atagtaaaaatataacaaaaatataaaagaaagaggatggaa-gggtcgaac 72  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  23999231 atagtaaaaatataacagaaatat-aaagaaagaggatggaatgggtcgaac 23999181  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 18923203 - 18923133
Alignment:
Q  38 aaaaatataaaagaaagaggatggaagggtcgaacccacgacctacgcaagaaaaacaaacatcatttcca 108  Q
    |||||||||||||||||||||||| |||||||||||  | |||||| |||||||||| |||||||||||||    
T  18923203 aaaaatataaaagaaagaggatgggagggtcgaaccagcaacctacacaagaaaaactaacatcatttcca 18923133  T

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