View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19863_low_9 (Length: 440)
Name: NF19863_low_9
Description: NF19863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19863_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 36806367 - 36806693
Alignment:
| Q |
13 |
cattaataacttcaaggttactactagtattaatttcattatctctgcattttcatttcaatgtttctttatagtatagattgaattcatatacattgtc |
112 |
Q |
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| T |
36806367 |
cattaataacttcaaggttactactagtattaatttcattatctctgcattttcatttcaatgtttctttataatatagattgaattcatatacattgtc |
36806466 |
T |
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| Q |
113 |
actgtaaatatagtttatcccctgttgacactcacaccagacactacattgagaatgaaatgtcgatataagtaacaatgtgagaaaaatactgacactt |
212 |
Q |
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| T |
36806467 |
actgtaaatatagtttatcccctgttgacactcacaccagacaccacattgagaatgaaatgtcgatataagtaacaatgtgagaaaaatactgacacgt |
36806566 |
T |
|
| Q |
213 |
gataccggtaataattcaagaaaatgaatgaattaattaaatgtaatttcatgcgtcggagtttgtcactaacacatgtcaaacaccaaacacgccttcc |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36806567 |
gataccggtaataattcaagaaaatgaatgaatgaattaaatgtaatttcatgcgtcggagtttgtcactaacacatgtcaaacaccaaacacgccttcc |
36806666 |
T |
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| Q |
313 |
atcagagacgttggtgctacagaggtt |
339 |
Q |
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| T |
36806667 |
atcagagatgttggtgctacagaggtt |
36806693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 36806717 - 36806811
Alignment:
| Q |
337 |
gttcactaacaatatttgacttcaaacataattatatttaccgtcacgtatataatgtttgtttactatatgtatcaaaattaaactctgatgat |
431 |
Q |
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| T |
36806717 |
gttcactaacaatattttacttcaaacataattatatttaccgtcacgtatataatgtttgtttactatatgtatcaaaattaaactcttatgat |
36806811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 12478325 - 12478379
Alignment:
| Q |
279 |
cactaacacatgtcaaacaccaaacacgccttccatcagagacgttggtgctaca |
333 |
Q |
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|||| |||||||||| |||||| ||||||||||||||||| | || ||||||||| |
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| T |
12478325 |
cacttacacatgtcagacaccagacacgccttccatcagaaatgtcggtgctaca |
12478379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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