View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19864_high_3 (Length: 275)
Name: NF19864_high_3
Description: NF19864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19864_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 12557830 - 12557679
Alignment:
| Q |
109 |
tatacttttctttcttgtaattgtaaatttcttacttttgatgtaatttctactacactatgtgtaaaagaaaaaataaagagctttgggatcgtaactt |
208 |
Q |
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| T |
12557830 |
tatacttttctttcttgtaattgtaaatttcttacttttgatgtaatttctactacactatgtgtaaaagaaaaaataaagagctttgggatcgtaactt |
12557731 |
T |
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| Q |
209 |
tgcaaggttaccatttaatatctttctatttaaattttgaaaacttgattgt |
260 |
Q |
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| T |
12557730 |
tgcaaggttaccatttaatatctttctatttaaattgtgaaaacttgattgt |
12557679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 12557986 - 12557828
Alignment:
| Q |
11 |
cataggctagtgaatatatgtaaccaaatattaggtttcatattgctttctcctagttgagtttaagaggaaaaattccactttctaacatgtttagata |
110 |
Q |
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| T |
12557986 |
cataggctagtgactatatgtaaccaaatattaggtttcatattgcttgctcctagttgagtttaagaggaaaaattccactttctaacatgtttagata |
12557887 |
T |
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| Q |
111 |
tacttttctttcttgtaattgtaaatttcttacttttgatgtaatttctactacactat |
169 |
Q |
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| T |
12557886 |
tacttttctttcttgtaattgtaaatttcttactttttatgtaatttctactacactat |
12557828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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