View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19864_low_1 (Length: 389)
Name: NF19864_low_1
Description: NF19864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19864_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 5979612 - 5979255
Alignment:
| Q |
20 |
cacattctatgaaagagtggtgcattgggaaactcgtgaaatttgtgaggagactattcagatatatcatactagcatagctgataatttaattagtata |
119 |
Q |
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| T |
5979612 |
cacattctatgaaagagtggtgcattgggaaactcgtgaaatttgtgaggagactattcagat----catactagcatagctgataatttaattagtata |
5979517 |
T |
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| Q |
120 |
ttattaagtacaaaaaattaaagacatttacaatgaatcaaaacttgcagtaatcacaataagaattaaattcttgaggaaaaaactactttgtgactct |
219 |
Q |
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| T |
5979516 |
ttattaagtacaaaaaattaaagacatttacaatgaatcaaaacttgtagtaatcacaataagaattaaattcttgaggaaaaaactactttgtgactct |
5979417 |
T |
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| Q |
220 |
tatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttcaagaccttattg |
319 |
Q |
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| T |
5979416 |
tatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttcaagaccttattg |
5979317 |
T |
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| Q |
320 |
ctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgct |
381 |
Q |
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| T |
5979316 |
ctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgct |
5979255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 381
Target Start/End: Complemental strand, 5983199 - 5983027
Alignment:
| Q |
209 |
tttgtgactcttatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttca |
308 |
Q |
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| T |
5983199 |
tttgtgattcttatgttcaagtgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacagatttca |
5983100 |
T |
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| Q |
309 |
agaccttattgctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgct |
381 |
Q |
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| T |
5983099 |
agaccttgttactcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgct |
5983027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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