View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19864_low_5 (Length: 217)

Name: NF19864_low_5
Description: NF19864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19864_low_5
NF19864_low_5
[»] chr7 (7 HSPs)
chr7 (11-202)||(21111539-21111730)
chr7 (20-198)||(18658665-18658843)
chr7 (25-196)||(21130505-21130676)
chr7 (74-202)||(21123371-21123499)
chr7 (24-126)||(21098535-21098637)
chr7 (24-126)||(21108154-21108256)
chr7 (25-120)||(29213149-29213244)
[»] chr4 (1 HSPs)
chr4 (32-195)||(39132067-39132230)
[»] chr3 (11 HSPs)
chr3 (24-135)||(26751133-26751244)
chr3 (24-129)||(26713967-26714072)
chr3 (24-135)||(26698809-26698920)
chr3 (24-135)||(26733972-26734083)
chr3 (24-135)||(26737197-26737308)
chr3 (24-178)||(26744171-26744319)
chr3 (25-120)||(47212387-47212482)
chr3 (29-129)||(47193415-47193515)
chr3 (50-129)||(9792536-9792615)
chr3 (24-120)||(26690373-26690469)
chr3 (24-120)||(26731684-26731780)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 21111730 - 21111539
Alignment:
Q  11 agtagcataggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatg 110  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21111730 agtatcattggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatg 21111631  T
Q  111 gatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111630 gatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgct 21111539  T

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Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 18658843 - 18658665
Alignment:
Q  20 ggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttag 119  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18658843 ggacggcttaaccacatgaacttgattgatatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttag 18658744  T
Q  120 ctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttct 198  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  18658743 ctgaaaatctttcatctaaaactaacacacttgactggagtaaaaggtatgatattgctttaggaacagctaaagttct 18658665  T

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Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 21130676 - 21130505
Alignment:
Q  25 gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaa 124  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  21130676 gcttaaccacatgaatttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaa 21130577  T
Q  125 aatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagtt 196  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21130576 aatctttcatccaaaaccaacacacttgattggactaaaaggtatgatattgctttaggaacagctagagtt 21130505  T

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Target: chr7; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 21123499 - 21123371
Alignment:
Q  74 aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123499 aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata 21123400  T
Q  174 ttgctttaggaacagctagagttcttgct 202  Q
    |||||||||||||||||||||||||||||    
T  21123399 ttgctttaggaacagctagagttcttgct 21123371  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 21098535 - 21098637
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||  ||||| | ||||| || ||||||||||||||||| |||||||| ||    
T  21098535 ggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagccga 21098634  T
Q  124 aaa 126  Q
    |||    
T  21098635 aaa 21098637  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 21108154 - 21108256
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||  ||||| | ||||| || ||||||||||||||||| |||||||| ||    
T  21108154 ggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagccga 21108253  T
Q  124 aaa 126  Q
    |||    
T  21108254 aaa 21108256  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 29213244 - 29213149
Alignment:
Q  25 gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc 120  Q
    ||||||||||||||| ||||| ||| ||||||| |||||||| || || |  |||||||| || || ||||||| |||| | ||||| ||||||||    
T  29213244 gcttaaccacatgaatttgattgaattgtggggttattgtgcagagggaatacatagaatgtttgtctatgagttcatgtataatggttctttagc 29213149  T

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Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 39132067 - 39132230
Alignment:
Q  32 cacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatcttt 131  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||    
T  39132067 cacatgaacttaattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatcttt 39132166  T
Q  132 catctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagt 195  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  39132167 catctaaaactaacatgcttgattggagtaaaaggtatgatattgctttaggaacagctagagt 39132230  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 26751244 - 26751133
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    |||||||||||||||| ||||| |  |||||||| ||||||||||| || ||||||||| | ||||| ||||||||||||||||| ||  ||||||||||    
T  26751244 ggcttaaccacatgaatttgattggtatgtggggttattgtgctgagggaaagcatagattgttggtttatgagtacatggaaaagggtactttagctga 26751145  T
Q  124 aaatctttcatc 135  Q
     ||||| |||||    
T  26751144 taatctctcatc 26751133  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 26714072 - 26713967
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||||| || || |||| | | ||||| ||||||||||||||||||||  ||||||||||    
T  26714072 ggcttaaccacatgaatttgattggaatgtggggttattgtgctgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctga 26713973  T
Q  124 aaatct 129  Q
     |||||    
T  26713972 taatct 26713967  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 26698920 - 26698809
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||| || || || || ||| | ||||| ||||||||||||||||||||  ||||||||||    
T  26698920 ggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctga 26698821  T
Q  124 aaatctttcatc 135  Q
     ||||| |||||    
T  26698820 taatctctcatc 26698809  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 26734083 - 26733972
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||| || || || || ||| | ||||| ||||||||||||||||||||  ||||||||||    
T  26734083 ggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctga 26733984  T
Q  124 aaatctttcatc 135  Q
     ||||| |||||    
T  26733983 taatctctcatc 26733972  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 26737308 - 26737197
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    |||||||||||||||| || || | ||||||||| ||||||||||| || || |||| | | ||||| ||||||||||||||||||||  ||||||||||    
T  26737308 ggcttaaccacatgaatttaattggaatgtggggttattgtgctgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctga 26737209  T
Q  124 aaatctttcatc 135  Q
     ||||| |||||    
T  26737208 taatctctcatc 26737197  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 26744319 - 26744171
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga 123  Q
    ||||||||||||||||||| || |  |||||||| ||||||||||| || || |||||| | ||||| || |||| ||||||||| ||  ||||||| ||    
T  26744319 ggcttaaccacatgaacttaattggtatgtggggctattgtgctgagggaaaacatagattgttggtttacgagtgcatggaaaacggtactttagccga 26744220  T
Q  124 aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgct 178  Q
     |||||||||||   || |||   |||||||||||||||||||||| | ||||||    
T  26744219 taatctttcatc---aaataa---acttgattggagtaaaaggtataacattgct 26744171  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 47212482 - 47212387
Alignment:
Q  25 gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc 120  Q
    ||||||||||||||| ||||| ||||||||||| |||||||| || || || ||||||||  | || ||||||| |||||| ||||| ||||||||    
T  47212482 gcttaaccacatgaatttgattgaaatgtggggttattgtgcagagggaaaacatagaatgcttgtgtatgagttcatggataatggttctttagc 47212387  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 47193415 - 47193515
Alignment:
Q  29 aaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatc 128  Q
    ||||| ||||| || || || |||||||||||||||| |||||| || |||||  ||||||| |||||||| || ||| |||| |||||||| || ||||    
T  47193415 aaccatatgaatttaattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatc 47193514  T
Q  129 t 129  Q
    |    
T  47193515 t 47193515  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 9792536 - 9792615
Alignment:
Q  50 atgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatct 129  Q
    |||||||||||||||| |||||| ||  ||||| ||||||| |||||||| |||||| |||| || |||| ||| |||||    
T  9792536 atgtggggatattgtgttgaagggaaaaatagacttttggtttatgagtatatggaacatggttcattagttgagaatct 9792615  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 26690373 - 26690469
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc 120  Q
    |||||||||||||||| ||||| |  |||||||| |||||||| || || || || ||| | || || | ||||||||||||||| || ||||||||    
T  26690373 ggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagc 26690469  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 26731684 - 26731780
Alignment:
Q  24 ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc 120  Q
    |||||||||||||||| ||||| |  |||||||| |||||||| || || || || ||| | || || | ||||||||||||||| || ||||||||    
T  26731684 ggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagc 26731780  T

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